Microbulbifer celer: LPW13_01730
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Entry
LPW13_01730 CDS
T07789
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mcel
Microbulbifer celer
Brite
KEGG Orthology (KO) [BR:
mcel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcel03019
]
LPW13_01730 (hrpA)
Enzymes [BR:
mcel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LPW13_01730 (hrpA)
Messenger RNA biogenesis [BR:
mcel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LPW13_01730 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
AAA_19
NACHT
AAA_16
AAA_25
nSTAND3
T2SSE
SLFN-g3_helicase
AAA_30
CwsA
Motif
Other DBs
NCBI-ProteinID:
UFN59187
LinkDB
All DBs
Position
467478..471326
Genome browser
AA seq
1282 aa
AA seq
DB search
MGRDRFRLQRTLRNVRRRLKEGKPADRMLAQLESQIAQSAALAEARKNKLPKVEWPEGLP
VVERREEIAELIAAHQVVVVAGETGSGKTTQLPKVCLELGRGIYGQIGHTQPRRIAARNV
ANRIAEELGQPLGDSVGFQVRFTDQSTEHTHVKLMTDGILLAEIQRDPMLSHYDTLIIDE
AHERSLNIDFLLGYLKTLLPKRPDLKLIITSATIDLEKFSRHFDDAPIIEVSGRTYPVDI
HYRPPADSDADLNEQIVGAVEELLHEEKSSSRRGGDILVFMSGEREIRECAKALRDAHLS
HIDVLPLYARLSLAEQNRVFAPHKGRRIVLATNVAETSITVPGIRYVIDPGTARISRYSY
RSKIQRLPVEAISQASANQRAGRCGRVSAGVCIRLYEENDFLQRPEFTDAEILRTNLAAV
ILQMLQLRIGDIRDFPFVDPPDQRLINDGYKLLQELQAVDGKGTVTKLGRALSRLPLDPR
LGRMLMESGSAQSLRELLIIVSALAVQDPRERPAEKRQASDEKHKQWQHEQSDFLSLVNL
WDGFEAQRQELSQNQLRKWCQKNFLSWMRLREWRDIHHQLRLAIRDLDLKMNAEPADYTC
VHKAILSGLLGNIGVRDENKEFIGCRNRRFHIFPGSGQFKKPPRWVVAAQLLETSRLFAH
TVAKIEPDWVLNCSGHLVKRNYFEPHYNPRSGAVMAFEKVTLYGLVLVEKQRIHFGKLDP
VTAREVFIREALVEQRYRGKGKFFRHYKDLLEELEDLEAKSRRRDIVVDDEVVFRFFDER
IPADIVNLAGFEKWRKQAEQKDPQLLFLPRDLMMQQDAGHVGQAQFPDSLTSGGIEYPLG
YHFAPGSAEDGVSIQVPVGALHQVPAARLEWLVPGLLRDKCIALVKNLPKQYRKYFVPVP
AAVDKALPRMQPDNQPLWEALSHELKRQTAQTLPEDAWQTAEQGLEDFYRFNIQVLDESG
KLLDQGRDLGALQSRYRDRVQKELASAGDDFEREGITSWDFGELPETHQLDQGGLKVRAY
PALIAHKDSVDLKLLDNPEEARRLSRAGICRLAILHLPEPVKYLRKELLKGKELGLSAAD
LGRREDVADDILMAAVRECFWGGENWPRSESAFLSALDARRDQLVSVAQEIGELLLKALT
QLVPLRKQIKQQKNLAVAMAVGDINRQLGSLFYRGCLFLTPLEWLRQYSRYLKGIELRLE
KAALDPNRDRRLSAEYQEAEEPYAAEASKHDGLYLAGDPAMVQYRWMLEEFRVSLFAQSL
KTLMPVSSKRLRKQWAEIKDTR
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcgaccgcttccgcctgcagcgcaccctgcgcaacgtccggcggcggctgaag
gaaggcaagccggcggaccggatgctggcgcagctggaatcccagatcgcgcagtctgcg
gcgctggccgaagcacgcaaaaacaagctgccgaaggtagaatggcccgagggtctgccg
gtggtggagcggcgggaagagattgccgaactgatcgccgcccatcaggtggtggttgtg
gcgggggagaccggctccggtaaaaccacccagctgcccaaggtgtgtctggagctgggg
cgtgggatttacggccagatcggccatacccagcccaggcggattgccgcgcgcaatgtg
gccaaccgtatcgcggaagagctggggcagccgctgggcgattctgtgggtttccaggtg
cgctttaccgaccagagcaccgagcacacccatgtcaaactgatgaccgacggtatcctg
ctggcagagatccagcgggacccgatgcttagccactacgataccctgatcatcgacgag
gcccacgagcgcagcctcaatatcgactttctgctgggctacctgaaaaccctgctgccc
aagcgcccggacctgaaactgatcatcacctccgccaccatcgacctggaaaaattttcc
cggcattttgacgatgcgccgattatcgaggtctccgggcgcacctatccggtggatatt
cattaccgcccgccggcagacagcgatgcggacctgaacgagcagattgtcggtgcggtg
gaggaattgctacacgaggaaaagtcctccagccgtcgcggtggcgacattctggtattc
atgagcggcgagcgggagatccgcgaatgtgcgaaggccctgcgggatgcgcacttgtca
catatcgatgtactgccactgtatgcgcgcctgagcctggcggagcagaaccgggtgttt
gcgccgcacaaaggccggcggatcgtgcttgccaccaacgtggcggaaacctccattacc
gtgcccggcatccgctatgtgatcgacccgggcaccgcgcgaatcagtcgctacagctac
cgcagcaagatccagcgattgccggtggaggccatttcccaggccagcgccaatcagcgc
gccggccgttgtggtcgtgtcagtgccggtgtgtgtatccgcctgtacgaggaaaacgac
tttctgcagcgcccggagtttaccgatgcggaaattctgcgtaccaatttagccgcggtg
attctgcagatgctgcagttacgtatcggtgatatccgggattttccttttgtggatcca
ccggatcagcgcctgatcaacgacggctacaaactgctgcaggaactccaggcggtagat
ggaaaaggcaccgtgaccaaactcggccgtgccctgtcgcggttgccgttggatccgcgc
ctcggtcgcatgctgatggaatccggatccgcccaaagtctgcgcgagctgctgattatt
gtcagcgcgctggcggtacaggatccgcgtgaacgcccggcggaaaaacgccaggcctcc
gatgaaaagcacaagcagtggcagcatgaacagtcggatttcctgtccctggtcaacctg
tgggatgggtttgaagcgcagcgccaggagctgagccagaaccagctgcgcaagtggtgt
cagaagaacttcctcagttggatgcggttgcgggaatggcgggatatccaccatcagctg
cgcttggcaattcgcgacctcgacctgaaaatgaatgcggagcccgcggactacacctgc
gtgcacaaggcgattctgtcgggactactgggcaatatcggcgtgcgcgacgagaacaag
gagtttatcggctgccgcaatcgccgtttccatatttttcccggatctggccagttcaag
aagccgccccgctgggtagtggccgcgcagttgctggaaaccagccgtctatttgcgcac
accgttgccaaaatcgaacctgactgggtgctgaattgttccgggcatctggtcaaacgc
aattactttgagccccattacaatccgcgctccggcgcggtgatggcgtttgaaaaggtt
accctgtacggactggtgctggtagagaagcagcgaattcatttcggcaagctggaccct
gtcaccgcgcgcgaagtatttattcgcgaggctttggtggaacagcgctatcgcggcaag
ggtaaattcttccgacactacaaagacctgttggaagaactggaagacctggaagcgaaa
tcccgccgccgggatatcgtggtggatgacgaggtggtgttccgctttttcgacgagcgg
attcccgcggatatcgtcaacctcgccgggtttgaaaagtggcgcaagcaggcggagcag
aaagatccgcagttgctgtttctgccgcgtgatctgatgatgcaacaggatgccggccat
gtaggccaggcgcagttccctgacagtctcaccagtggcggcatcgaatatccgctcggt
tatcacttcgcccccggcagtgcagaagacggggtgagtattcaggtccccgtgggcgca
ttgcatcaggtgccggcggcacgactggagtggttggtgccgggtttgttgcgggacaag
tgcatcgcgctggtgaaaaacctccccaaacaatatcgcaagtactttgtaccggttcct
gccgctgtggataaagcactgccgcgtatgcagccggacaaccagcccttgtgggaggca
ctgtcccatgaactgaaacgccagaccgcgcaaacgctgccggaagacgcgtggcagact
gcggagcagggcctggaggatttctatcgttttaatatccaggtactggacgaaagcggc
aagctgctggaccaagggcgcgatctgggcgcgctgcagtcgcgttaccgcgatcgggta
cagaaagagttggcgagcgccggtgacgatttcgagcgcgagggcatcacgagctgggat
ttcggtgagttgccggaaacccaccagctggatcagggcgggctcaaggtgcgcgcctac
ccggcattgattgcacataaagacagcgtcgatctcaagttgctggataacccggaagag
gcgcgacgactgtcccgtgccggtatctgccggcttgccatactgcacttgccggagccg
gtgaagtatctgcgcaaggagttgcttaaggggaaagagctcggtctcagtgctgccgat
ctcgggcgccgtgaggatgtggccgatgacattctgatggcggccgtacgcgaatgcttt
tggggcggcgaaaactggccgcgcagcgagtcggcgtttctttccgcactggacgcacgt
cgggatcaattggtcagtgttgcccaggaaattggcgaattgctcctgaaggcgctcacc
cagctggtcccgctgcgcaaacagatcaaacaacagaaaaacctcgccgtggcgatggcg
gtgggagatatcaaccgccagctgggtagcctgttctatcgcggctgcctgttcctcacc
ccactggaatggctgcgccagtacagccgttatctgaaagggatcgaattgcgcttggaa
aaggctgcgctcgaccctaaccgcgatcgccggctcagtgcggaatatcaggaagcggaa
gaaccctatgccgccgaggcttcaaagcacgacgggctctatcttgccggtgacccagcc
atggttcagtaccgatggatgctggaggagtttcgcgtctcgctgtttgcccaatccctg
aaaaccctgatgccggtatcctccaagcgcctgcgcaagcagtgggcggaaatcaaggac
acacggtaa
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