Microbulbifer celer: LPW13_05060
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Entry
LPW13_05060 CDS
T07789
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mcel
Microbulbifer celer
Pathway
mcel03410
Base excision repair
mcel03430
Mismatch repair
mcel03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mcel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LPW13_05060 (recJ)
03430 Mismatch repair
LPW13_05060 (recJ)
03440 Homologous recombination
LPW13_05060 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcel03400
]
LPW13_05060 (recJ)
DNA repair and recombination proteins [BR:
mcel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LPW13_05060 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LPW13_05060 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LPW13_05060 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
UFN58413
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Position
1253008..1254738
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AA seq
576 aa
AA seq
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MNAIIRRRPVDMSTGRFTSATPKILQRVLLGRGVTSDDELDHQLTRLHSPASMRGVEKAV
GLLVEAVRAQHKILIVGDFDADGATSSTLSMLALGALGAGPVDFLVPNRFEFGYGLTPEI
VEVAREYNPDLLITVDNGISSIEGVAAARAAGLKVIVTDHHLPGSELPEADAIVNPNQPD
CDFPSKNLAGVGVIFYLLSRLKSVLQQQGWFEETGIAAPNMAEYLDLVALGTVADLVPLD
QNNRVLVHQGIARIRAGRCRPGIQALMDVAGRDRSRLSTTDIGFILGPRINAAGRLDDIG
TGIRCLLTQDPQEARELAAELDGLNRDRKAIEAGMQREAMAALEKLQLDGAELPWSLCLY
DGEWHQGVVGILASRIKEKFHRPVIAFADGDNGLVKGSARSIPGLHIRDALSDVAATHPH
LISKFGGHAMAAGLSLPAENLAAFTDAFEAAVRSRISETQLQAVIDSDGELQPAEFSMET
AAILRACAPWGQAFPEPEFDGEFLLLQQRIVGERHLKMTVAPAAAPQQAIDAIAFNIDTD
QWPAAVDRVRLAFKLDINEFRGRQSLQLMVSHLEPL
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgattattcgacgacggccagtggatatgtccactggccgttttacttccgct
acgccgaaaatcctgcaacgtgtgctgctcgggcgcggtgttaccagtgacgacgagctg
gatcatcaactgacccgtctacacagccccgcttccatgcgcggggtggaaaaggctgtt
gggctgctggttgaggccgtccgcgcgcagcacaaaatcctgatcgtgggcgacttcgat
gccgacggtgccaccagcagtacgctgtcgatgctggccctcggcgccctgggcgcgggg
ccggtagattttctggtgcccaaccggttcgagttcggctatggcctcaccccggaaatt
gtcgaggtcgcccgggagtacaacccggacctgctgattactgtcgataatggcatcagc
agtatcgagggcgtggccgcggcgagagcggcgggcctgaaagtcatcgtgaccgatcac
cacctgccgggcagtgaattgcccgaggcagatgccatcgtcaatcccaaccagccagat
tgcgatttccccagtaaaaacctcgccggtgtcggcgtgattttctatcttctcagtcgc
ctgaagagcgtcttgcaacagcaggggtggtttgaggaaaccggtattgccgcgccgaat
atggcggaatacctggatctggtggcgctggggaccgtggcagatctggtgccgctggat
cagaataatcgcgtactggtgcatcagggaatcgcccgtattcgcgccggccgctgtcgc
cccggaatccaggcgttgatggatgtagcggggcgggatcggtctcggctttccactacg
gatatcggttttatcctcgggccgcgtatcaatgccgccggacgtctggatgatatcggc
accggtatccgctgtctgctgacccaggatccgcaggaggcgcgggaactggcggcagaa
ctggacggcctcaatcgggatcgcaaggccattgaagccggtatgcagcgggaggccatg
gccgcactggaaaagctgcagctggacggcgccgaattgccgtggagcctgtgtctttac
gacggtgaatggcatcagggggttgtcggtattctcgccagtcgcatcaaggaaaaattc
catcgcccggtgatcgccttcgccgatggggacaatggcctggtaaaaggctctgcgcgc
tcgattcccggtttgcacattcgcgacgcgttgagcgatgtggccgccactcacccgcac
ctgatcagcaagtttggcggtcacgccatggcggcagggttgagcctgccggcagaaaac
ctggcggcttttaccgatgcttttgaagcggcggtccgcagcagaatttccgaaacccaa
ctgcaggccgtgattgattctgatggtgagttgcaaccggcagaattctccatggaaacc
gcggccatcttacgcgcctgcgcaccctgggggcaggcgtttcccgaaccggaatttgat
ggtgaattcctgttgctgcagcagcgtattgtcggtgagcgtcacctgaaaatgaccgtg
gcgccggcggctgcgccgcaacaggccattgacgccattgccttcaatattgatacggat
cagtggccggcagcggtggaccgggtgcgcctggccttcaaactggatatcaatgaattt
cgcggccgccagtcgttgcaattgatggtcagccacctggagccgctctga
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