Microbulbifer celer: LPW13_06780
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Entry
LPW13_06780 CDS
T07789
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mcel
Microbulbifer celer
Pathway
mcel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPW13_06780 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcel03019
]
LPW13_06780 (rne)
03009 Ribosome biogenesis [BR:
mcel03009
]
LPW13_06780 (rne)
Enzymes [BR:
mcel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LPW13_06780 (rne)
Messenger RNA biogenesis [BR:
mcel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LPW13_06780 (rne)
Ribosome biogenesis [BR:
mcel03009
]
Prokaryotic type
rRNA processing factors
LPW13_06780 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UFN58741
LinkDB
All DBs
Position
complement(1614797..1618027)
Genome browser
AA seq
1076 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQWLYDLDIENRTREQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEISREYFLKQPKDIEGRIKIKDVVKEGMEVIVQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGDDRSQLRDALSSVEVPSGMGIIVRTAGVGRSGEE
LQWDLNYLLQLWAAIKKESDEAKAPHFLFQESNVIIRAIRDYMRDDIGEVIVDEEGAYHL
AAEFARQVMPGYANKVKSYNDPIPLFNRYQIESQIETAFEREVKLPSGGSIVIDVTEALI
SIDINSSRATKGGDIEETARNINLEAADEIARQLRLRDMGGLVVIDFIDMQNKSNQREVE
KRMEKALNMDRARVQVGRISRFGLLEMSRQRLRPSLGETTFRVCPRCSGQGTIRGTKSLA
LSILRLVEEEAKKERSAEIRAITPVNVATYLLNEKRKAISDIESRNKTLVVVVPNAELET
PHFEVQRLRDDDSATLETSYKIAGTIDEAADKDEEPLRAPAQPAVQQITHTAPAPTPAAK
PQVVDKPKRKQSEKKKPAGLFSRLIGAIAALFGGSEEESKSDKKHTKSSGRGKNYQQRNR
GQRGGRNRSRNRNRRDDDRKDDNKRERSDKRRGDKQRGDTQAQRGDSQEVSERQENPRSR
DGQREGQRRSRRRRNSDRRNEQQPVANETTNVATESDVSTESSDNQQRPARRPSNVRGRP
QPRRRGRRNEAAAQNAPDQADQEQAELNREVNEAIDTAERETASSEPKAKAERPQEKQPR
KEKREDRPSRKQRAEAKSEASASESGQQRERKAEAPAADKPQVSEAESTKVAGSEPQTAK
APKAEPAKKQPKAEDNQPEAEAPTAPTERGEPKASKTEAAEPAPAEATASESVTSEAASS
EKASHESKPEAEQNANVAEAAKAETRGAEPADTQKSQVNDDFMAESPQGSAAVAVHEAKA
EEQTEEAAEVTTSTEASNEEASETQVKAAEHKEPRSESAPESNAPVRASNDPRINPKPLV
DFKVVTERPEVGELRPLDTAQPAGIEHKPRALSRPANDPRVASNSTSEAEADSEAG
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaatgctgattaacgcaacccagcccgaagagctgcgcgttgccctcgtcgat
ggccaatggctgtacgacctcgatatcgaaaatcgcacccgcgaacagaaaaaagccaat
atctacaaaggtaaaatcacccgcgtagagccctccctggaagctgcctttgtcgattac
ggtgctgagcgccacggcttcctgccgctgaaagaaatttcccgcgaatacttcctcaag
caacccaaagacatcgaaggtcgcatcaagatcaaggatgttgtcaaagaagggatggaa
gtcattgttcaggtagataaagaagagcgcggcaacaaaggcgccgccctcaccaccttt
atcagccttgccggccgctatctggtactgatgccgaacaatcctcgcgctggcggcatc
tcccgccgcatcgaaggtgacgaccgcagccagctacgtgacgcactgtccagtgtagaa
gtgccttccggcatgggcattatcgtgcgtactgccggcgttggccgcagtggcgaagag
ctgcagtgggacctcaactacctgctgcaactctgggctgcgatcaaaaaagaatccgac
gaagccaaagcgccccacttcctgttccaggaaagcaacgtcatcatccgcgcaatccgc
gactacatgcgcgatgacatcggtgaagtcattgtcgatgaggaaggcgcttatcatctg
gccgcggagtttgcccgccaggtaatgcccggctacgccaacaaggtaaagagctacaac
gaccccattcccctgttcaaccgctatcagatcgaaagccagatcgaaaccgcgtttgag
cgcgaagtgaagctcccctccggtggctctatcgttatcgacgtgaccgaggccctgatc
tccattgatatcaactcctcccgcgccaccaaaggcggcgacatcgaggagaccgcccgc
aatatcaacctggaagccgccgacgagatcgcgcgccagttgcgcttgcgggatatgggt
ggccttgtggtcatcgatttcatcgacatgcagaacaagtccaaccagcgcgaagttgaa
aagcgcatggaaaaggctctgaacatggaccgcgcccgggtacaagtgggccggatttcc
cgtttcggtctgctggagatgtcccgtcagcgcctgcgcccatcactgggggaaaccact
ttccgtgtctgcccacgctgtagcggccagggcaccattcgcggcaccaagtccctcgcc
ctctccattctccgcctggtggaagaggaagcgaagaaagaacgcagcgccgagatccgg
gcgatcaccccggtgaatgtagcgacctacctgctgaacgaaaaacgcaaagcaatttct
gacatcgagtcccgcaacaagacccttgtagtcgtggttcccaatgccgagctcgagacc
ccgcacttcgaagtgcagcgcctgcgtgatgacgattccgccactctggaaacgtcttac
aagatcgccggcaccatcgacgaagccgcagataaagacgaagagccactgcgcgcaccg
gcgcaaccggcggtgcagcagatcacgcacactgccccggctcccactccggctgccaaa
ccccaagtggttgacaagccaaagcgcaaacagagcgagaagaaaaagccagctggcctc
ttttcccgcctgattggcgctatcgcagccctgtttggcggcagcgaagaggagtccaaa
tcggacaagaaacacacgaagtccagcggacgcggtaaaaactaccagcaacgcaaccgt
ggccaacgcggcggacgcaaccgcagccgtaaccgcaatcgtcgcgacgacgaccgtaag
gacgacaacaagcgcgagcgcagtgacaaacgtcgcggcgacaagcagcgtggtgacact
caagctcagcgcggagactctcaggaagtatcggagcgccaggagaatccgcgtagccgc
gacggtcagagagaaggccagcgtcgcagccgtcgccgtcgcaacagcgatcgtcgcaac
gagcagcagccggtagcgaacgaaaccaccaacgtcgctacagaaagcgatgtgtctaca
gaaagtagcgacaaccagcagcgccctgcccgtcgcccgagcaacgtacgcggccgcccg
cagccccgtcgccgcggccgccgcaacgaagcggccgcgcagaatgcgccggatcaagcc
gatcaggagcaggcggaactgaaccgtgaagtaaacgaagcgatcgacacggcggaacgc
gaaaccgcttccagcgagccaaaggccaaagccgaacgcccgcaagagaagcaaccgcgc
aaagaaaagcgtgaagatcgcccgtctcgcaagcagcgcgcagaggcaaagtctgaagct
tcagccagtgaatccggtcagcagcgtgagcgtaaagcggaagcgcctgcagccgacaaa
ccacaggtaagcgaagcggaaagcaccaaagtggcaggcagcgagccgcagacggcgaaa
gcccccaaagcagagcctgccaagaaacagcccaaggcagaggataaccagccagaagcc
gaagcaccgaccgcccccactgagcgtggcgagccgaaagcctcaaaaactgaagcggct
gaacctgcaccagcagaggctacagcctctgagtcagtcacctctgaagccgcctcttct
gagaaagcttcccatgagagcaaacctgaagctgagcaaaatgccaacgtagcggaggcg
gcgaaagcggaaacccgcggagcggaacctgccgatacccagaaatcccaggtaaatgac
gatttcatggcagagagcccacagggttctgcagcggttgcagtgcacgaggccaaggct
gaagagcagaccgaagaagccgcggaggtcacgaccagtactgaagcgtccaatgaggaa
gcctctgaaacccaggtgaaagctgctgagcacaaagaacctcgctccgaaagtgctccg
gaatccaacgcacctgtccgcgccagtaacgacccgcgaatcaacccgaaaccattggtg
gatttcaaagtcgttactgaacgcccggaagttggtgaacttcgccctctggacactgcg
caaccggctgggatcgaacacaagccacgcgccctctcgcgcccggccaacgatcctcgc
gtagcgagcaactccaccagcgaagcggaagcagactccgaagcaggttga
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