Microbulbifer celer: LPW13_12040
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Entry
LPW13_12040 CDS
T07789
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mcel
Microbulbifer celer
Pathway
mcel03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mcel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LPW13_12040 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcel03021
]
LPW13_12040 (rpoB)
03400 DNA repair and recombination proteins [BR:
mcel03400
]
LPW13_12040 (rpoB)
Enzymes [BR:
mcel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LPW13_12040 (rpoB)
Transcription machinery [BR:
mcel03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LPW13_12040 (rpoB)
DNA repair and recombination proteins [BR:
mcel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LPW13_12040 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
Bfr1
7TMR-HDED
DUF536
Motif
Other DBs
NCBI-ProteinID:
UFN56300
LinkDB
All DBs
Position
complement(2849120..2853193)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPKVMDVPFLLAIQLDSYRKFTQADSRPDERLDVGLQAAFKSV
FPIVSYSGNAALEYVSYTLGKPVFDVKECTLRGVTYACPLRVRVRLIIYDKESANKSIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYAARV
IPYRGSWLDFEFDPKDLVYVRIDRRRKLPATILLRALGYSSQEMLEMFFETSKFELHEDN
VSLELIPSRLRGDVASFDIKDGSGKVIVEEGRRITPRHIRQLEKAGVANLEAPHDYLHGR
VLAHDVIDDSTGEVAVECNTEITEEVIGKLRVLNVKTVETLYTNDLDCGPFVSDTLRADP
SRTQLEALVEIYRMMRPGEPPTKESAESLFENLFFSDERYDLSAVGRMKFNRRLGREDET
GEGTLSKEDIVDVLKTLIEIRNGRGMVDDIDHLGNRRVRSVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYSRANHYGFLESPYRKVV
NGQATDEIEYLSAINEANYVIAQASAAMDENNRFTDDLVSVRHHNEFTLKNPEEIQYMDV
SAKQVVSVAAAMIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERTVARDSGVC
VVARRGGVIERVDASRVVVRVHDDEVEAGDAGVDLYSLTKYTRSNQNTCINQRPIVKTGD
VVERGDILADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQE
LTCIARDTKLGSEEISADIPNVGESALNKLDESGIVYIGAEVGAGDILVGKVTPKGEAQL
TPEEKLLRAIFGEKASDVKDTSLRAPSGTRGTVIDVQVFTRDGLQKDQRSIDIEKAQLDE
VRKDLNEEYRIVEGATFERLQAALDGQTVAGGKGVKKGDVLNAEVLAGLPREDWFKLRMV
DETLNEQLEKTEAQLEERRKQLDEVFEDKKKKLESGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVISVIKPVEDMPYDENGEPVDVVLNPLGVPSRMNVGQVLEMHLGMAAKG
LGVKIDRMIKEKQEVEKIRGFLGEVYNSTGGRFEDLDQLSDQEVQAMAHNLRKGVPMATP
VFDGAAEPEIKKLLRLADIPDSGQITLYDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTKMY
KNIVDGDHRMEPGMPESFNVLVKEIRSLGMNFELENE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggattttggcaaactgcctaag
gtcatggacgtacctttcctgcttgcgatacagctggattcgtatcgcaaatttacacag
gccgactcgcgcccggatgagcgtctggatgttggcttgcaggcggcgttcaagtctgta
tttccaattgttagttattccggcaacgctgcactggaatacgtaagctacaccctcggc
aagccggtcttcgatgtcaaggagtgtacgctgcgtggggtcacctacgcttgtcctctg
cgggtgcgtgtgcgcctgattatttacgataaagaatctgccaataagtccatcaaggac
atcaaggagcaggaagtgtacatgggcgaaattccgctcatgaccgagaacggtactttt
gttatcaatggtaccgagcgagtgatcgtttcccagctgcaccgctccccgggtgtgttc
tttgatcacgacaagggcaagacccactcctccggcaagctgttgtacgccgcacgggtg
attccttaccgtggctcctggctggacttcgagttcgatccgaaagatcttgtctacgta
cgtatcgaccgtcgccgtaaactgccggcgaccattctgctgcgcgccctgggttacagt
tcccaggaaatgctggagatgttcttcgagaccagcaagttcgaactgcacgaagacaat
gtcagcctggagctgattccatcacgtctgcgtggtgacgttgcttcctttgatatcaaa
gacggcagcggcaaggtcattgtcgaagaaggccgccgtattactccgcgccatatccgt
cagctggagaaggccggtgttgccaatctggaagcgccgcacgattacctccacggccgc
gtactggctcatgacgtgatcgacgattccaccggtgaagtggcggtggaatgtaatacc
gaaattactgaagaagtcatcggcaaactgcgcgtgctgaacgtcaagaccgttgagacg
ctgtacaccaacgatctcgattgtggtccgttcgtttccgataccctgcgtgcggatccg
tcccgcacccagctggaagcactggtcgagatctaccgcatgatgcgcccgggcgagccg
cccaccaaagagtctgcggaatccctgttcgagaacctgttcttctctgacgagcgttat
gatctgtctgcggttggccgcatgaagttcaaccgtcgcctgggtcgtgaagacgaaacc
ggcgaaggtaccctgagtaaagaagacatcgtcgatgttctgaagacgctgatcgaaatc
cgtaacggtcgcggtatggtggacgatatcgaccacctgggtaaccgccgtgtacgttcc
gtgggcgagatggccgaaaaccagttccgcgtgggcctggtgcgtgtagagcgcgcggta
aaagagcgtctgtccatggcggagtccgaggggctgatgcctcaggatctgatcaacgcc
aagccggtggccgctgcggtgaaggaattcttcggttcctcccagctgtcccagtttatg
gaccagaacaacccgctgtcagaagttacccacaagcgtcgcgtttccgcgttgggcccg
ggtggtctgacccgcgagcgtgcgggctttgaggtgcgggatgtgcacccgactcactac
ggccgcgtatgccccattgagacaccggaaggcccgaacatcggtctgatcaactctctg
gcgacctactcccgcgcgaaccattacggcttcctggaaagcccgtaccgcaaggtagtg
aacggccaggcaactgacgagatcgagtatctgtcagcaatcaacgaagcgaactacgtg
attgcccaggcctccgctgccatggatgagaacaaccgctttaccgatgacctggtcagc
gtacgtcaccacaacgaatttaccctgaagaacccggaagaaatccagtacatggatgtt
tccgcgaagcaggtggtatccgttgccgcggcgatgattccgttcctggaacacgatgac
gccaaccgcgcattgatgggttccaacatgcagcgtcaggcagtgccaaccctgcgcgcc
gacaagccgctggtcggtaccggtatggagcgcacggtagcgcgcgattccggtgtctgc
gtggtagcccgccgcggcggtgtgatcgagcgtgttgatgccagccgtgttgttgtgcgt
gtgcatgacgatgaggtggaagccggtgacgccggtgtggatctgtacagcctgaccaag
tacacccgctccaaccagaatacctgcatcaaccagcgtccgattgtgaagaccggtgat
gtagttgaacgtggcgatattcttgccgacggcccgtccgtagacctgggtgagctggcg
ctgggccagaacatgcgcatcgcgtttatgccctggaacggatacaacttcgaggactcc
atcctcgtgagtgagcgtgttgtacaggacgatcgcttcaccaccatccacattcaggag
ctgacctgtattgcccgtgacaccaagctgggcagtgaggaaatttctgcggatatcccc
aatgtgggcgagtctgcgctgaacaagctggatgagtcaggcatcgtctacatcggtgca
gaagtgggcgctggcgatattctggtcggtaaggtgaccccgaaaggtgaagcccagctg
acgccggaggaaaaactgctgcgtgcgatcttcggtgagaaggcgtcagacgttaaagac
acctctctgcgtgcgccttccggcacccgcggtaccgtaattgacgttcaggtgttcact
cgcgacggtctgcagaaagaccagcgctctatcgatatcgagaaggcgcagctggacgag
gttcgcaaggacctgaacgaagagtaccgtatcgttgaaggcgccacctttgagcgtctg
caggccgctctggatggtcagaccgttgccggcggtaaaggcgtcaagaaaggtgacgtg
ctgaacgcagaagtcctggcgggtctgccccgcgaagactggttcaagctgcgcatggtt
gacgagaccctcaacgaacagttggaaaaaaccgaagcccagcttgaagaacgccgcaag
caactggacgaggtcttcgaagacaagaagaagaaacttgagtccggtgatgacctggcg
ccgggcgtgctgaaaatcgtcaaggtttacctggcgatcaagcgtcgcatccagccgggt
gacaagatggccggccgccacggtaacaaaggtgttatctccgtgatcaagccggtcgaa
gatatgccttacgacgaaaacggcgagccggtcgacgtggtgctgaacccgctgggtgta
ccgtcgcggatgaacgttggtcaggtactggaaatgcacctgggcatggccgcgaaaggt
cttggtgtgaagatcgaccgcatgatcaaggaaaagcaggaagtcgagaaaatacgcgga
ttcctgggagaggtgtacaactccactggcggtcgcttcgaggatctggatcagctgtcg
gatcaggaagtacaggccatggcgcacaatctgcgcaagggcgtaccgatggctacaccc
gtattcgatggtgctgcggaacctgaaatcaagaagctgctgcgtctggcagacattccg
gactccggtcagatcactctgtacgacggtcgtactggtgatgcgttcgagcgtccggtc
actgtgggctacatgtacatgctgaaactgaaccacctggtggacgacaagatgcacgcg
cgttctaccggttcctacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggtgagatggaggtgtgggcactggaagcttacggtgccgcttac
accctgcaggaaatgctcacggtcaaatccgatgacgtggaaggtcgaaccaagatgtac
aagaacatcgtggatggcgaccaccgcatggagccgggcatgcccgaatccttcaacgta
ctggtcaaagagatccgctcgctgggtatgaacttcgagctggaaaacgagtaa
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