Mugil cephalus (flathead mullet): 124995604
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Entry
124995604 CDS
T08342
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124995604 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcep03032
]
124995604 (topbp1)
03400 DNA repair and recombination proteins [BR:
mcep03400
]
124995604 (topbp1)
DNA replication proteins [BR:
mcep03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
124995604 (topbp1)
DNA repair and recombination proteins [BR:
mcep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
124995604 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
124995604
NCBI-ProteinID:
XP_047424064
LinkDB
All DBs
Position
18:complement(10313398..10324585)
Genome browser
AA seq
1522 aa
AA seq
DB search
MSTGDKEAFIVKFVEGKGPKNEYAVKAYEAILELQSEKHLKTIKEEDVLQMDKKDKALFV
FSSFTSPAFLHCKKLCCRVVSPLVVLYCLQHQRCVPKAEKPVYNMAMADVTISCTSLDKA
TRAEIMDLVQLMGGRVYLDLNVSVTHLIAGEVGSKKYLVAASLSKPILLPSWVRACWEKS
QDSLFRYTDLPTEEYLCPVLRGCTVCVTGLSRTERKEVERLCEEHGGNYSGQLRMNECTH
LIVSDPTGQKYECARSWNVYCVSLHWLFDSIEKGFCQDESRYIVERNGSKTTRPHTSTPT
GTSKKEEGPSLLGLSHISVNASMTINDTALTTTTSAISRLEAPDPIDSLDLTVCPADDIL
DGCKLYLCGVSGKRLEKLRRLVNAAGGLRFNQLSEELTHVVMGQLDEELKNFLSKATHRP
HVVTVQWLIDSFSKGSLLPESGYLHPDCLPPAPVTVSVPAHHVPTSSPSAGPPVASPSTP
THKRADEDLLSQYMDDDPTVIDMPPPPHPAAEGNSRRSVSTAAGAPPEPCAANRTTEPQP
DASLQEASEAGLFFGKCFLLVGFGGEAEAQLSALVTEHRGRLLMGRTRVVADYAVVPLLG
CSVEATVDEVVTDTWLAMCVEKQCLLELSSSPLFTPVPVMDGRFPLKDCVLSVSQFTGAE
RESLVELAKHIGANVQDYFVRLANQKKGMLVSTHLVVKTPEGTKYQAAKKWGFPAVTMRW
ILESARTGQRADEERFSVDRPPSPEKDEESFVGGSQKPAMPPPARLSPDIPLLGVQSGKA
VTPLDLGRFQSKMFHSVLNKMKPKEDLSTPKQNKEDGRKNPLQKEQALQLDTPSRFLSRD
HLFRPSFNVKDALGALDTPGGRLKPGEKVETPLTDVINRNLKVALANSTRANVSDMQAAS
ASPQFTKTTEKEVPEKDPGPLTGVVICVGKKLSKMQSELNAVAASLGADFRWACDDTVTH
YIYQGRVGDNTKEYKAVKDRGLHVVSQHWLHACAEEQKHVPESMYPFNYNPKMSLTLSQV
PSSSQRSPPLTRTQLREVSEGKGNKSELNVTEEATNLRRVSDGSVDHEEMNDSTERGETL
EMRENLQRQLQEIMSATKLTTGRRSSIRLARLGSGGADSGPHTPEGSRVGRSGNRRTLEA
LRVSREAAMDVNTEPSQSEQIVWDDPTAREERAKLADNFQWPGSPSQHSEPLAHPPPHTR
DNGPQFRDSMTDSELVEMAACDVIDQQMGQKILTPPSEESEKDILTPKAPSIAFPLANPP
VAPEPQEEKEEEKHPPRFQLSSLSPQERIDYSHLIEELGGVVLDKQSFDPSCSHIIVGTP
LRNEKYLAAMAAGKWILHRSYLEACRCASHFIQEDEFEWGSGSILDALPSITSQQKRLAL
AAMRWRKSLQRRSAPEGAFSGWIVLLNIDQSRESGFRRLLQSGGAKVLPSPSPSLYKEAT
HLFADFSRLKPGDFRVNVSEATSQGVTCLKPEYIADYLMQEPAPSIELYQLTEAPSEEAP
GTPSRKRKAPADASKLKKSRLN
NT seq
4569 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgggagacaaggaagcttttattgtgaagtttgtggagggtaaaggaccaaaa
aatgagtacgctgtcaaagcttacgaggctattttggagctgcagtctgagaagcatttg
aaaaccatcaaagaggaagatgttttacagatggacaagaaggacaaggctctgtttgtc
ttcagcagcttcacgtctcctgcgttcctacactgcaagaagctttgctgcagagttgtg
agtccgctggtggtgttgtactgcctgcaacatcaacgctgtgtccccaaagcggagaag
cccgtctacaacatggccatggctgacgtcactatttcctgcaccagcctggacaaagca
acacgggcagagataatggacctggtgcaactcatgggaggacgggtctaccttgatcta
aatgtgtccgtcacacacctgattgcaggagaggtgggcagcaagaagtacctggtcgct
gccagtttgagtaaacctattctactgccctcatgggtcagagcatgctgggaaaaatca
caggacagtcttttcaggtatacagatctgcccacggaggaatatctgtgccctgtgctg
cgtggctgtactgtttgtgtcacaggcctctccagaacggagcgcaaagaggtggagcgg
ctttgtgaggagcatgggggcaactacagcggtcagctcagaatgaatgagtgcacacac
ctcattgttagtgatccgacaggtcagaaatatgagtgtgctcggagttggaatgtgtat
tgcgtgtctctgcactggctgttcgacagtatagagaagggcttctgtcaagacgagagc
agatacatcgtggaacgcaatgggtcgaaaaccactcgacctcatacgtccactcccact
ggcaccagcaagaaggaggagggtccatctcttttgggcttgagccacatttctgtcaac
gccagcatgaccataaacgacacagccctcaccaccaccaccagcgccatcagccgcctg
gaagctccagaccccatagacagcctggatctcaccgtgtgccccgctgatgatatattg
gacggctgtaaactgtatctgtgtggcgtgtcggggaagaggctggagaagctgcggcgt
cttgtgaatgccgcaggaggtctgcgcttcaaccagctcagtgaggaacttacgcatgtg
gttatgggacagctggacgaggaactgaagaactttctctccaaagccactcacaggcca
catgtagtaacagtccagtggttgatagacagcttctccaaaggcagcctgctcccagaa
tcaggatacctccaccccgactgtctgcctcctgctccggtgactgtttctgtgccagct
catcacgtacccacctcctcaccgtcggccggtccacctgtcgccagtcccagcactccc
acgcacaagagggcagacgaggaccttctctcacagtacatggatgacgatcctacagtc
atcgatatgccgccgccgccacatccagcagccgaggggaacagcaggaggtccgtcagc
accgcagcaggggccccaccagaaccctgcgcagcaaaccgaaccacagaacctcagcca
gacgcgtctctgcaggaagccagtgaggcggggctgtttttcgggaagtgtttcctcctc
gttggtttcggcggcgaggccgaggctcagctctctgcgctggtgacagagcacagaggc
aggttgctgatgggccgcacacgggttgtggcggactatgccgtcgtcccgttgctgggc
tgctcggtggaggccacggtggacgaagtggtcaccgatacctggctggccatgtgtgta
gagaagcagtgtcttctggagctgtcttccagccctctgttcacgccagttcctgtgatg
gatggacgttttcctctcaaagattgcgtcctctcggttagccagttcacaggggcagag
agggagtctttggtggagctggccaagcacattggagccaatgtccaggattactttgtg
cgcctggccaaccagaagaaaggcatgctggtcagcactcatctggtggtaaaaaccccc
gagggcacaaagtaccaggcagcgaagaagtggggtttccctgccgttaccatgcgctgg
atactggagtctgctcgaaccggccagagggctgacgaggagaggttttcagtcgaccgg
ccaccctcgccagagaaggacgaagagagtttcgtcggcggctcccagaaaccggccatg
cctccaccggctcgcctgtctccagacatcccgctgctcggcgtccagagcggcaaagct
gtcacgccgctggatctgggtcgctttcaaagcaaaatgtttcactctgtgttgaacaag
atgaaacccaaagaggacctcagcacccccaagcaaaacaaggaggacggcagaaagaat
ccacttcagaaggagcaggccctgcagctggatactccttctcgattcctcagtagagat
catctcttcaggccttcgtttaacgtcaaggatgcacttggagctttggatactccgggt
gggagattgaagccaggagagaaggtggagactccactaactgacgtcatcaacaggaac
ctgaaggtggctctggctaatagcacccgcgctaacgtctcagacatgcaggcagcctcc
gctagcccccagtttacaaagacaactgagaaggaggttccagagaaagatccgggtcct
ctgactggtgttgtgatctgtgtggggaagaaactgagcaaaatgcagagcgagctgaac
gccgtagctgcctcacttggagccgacttcaggtgggcgtgtgatgacacggtgacacac
tacatctaccaaggccgagtcggggacaacactaaagaatacaaagcagtgaaggacaga
ggactgcatgtggtctcccagcactggctgcacgcttgtgctgaggagcagaagcacgtc
cccgagtctatgtaccctttcaactacaaccccaagatgagcctcaccctgagccaggtc
cccagcagctctcagaggtctcctcctctgacgcgaactcagctcagagaagtctctgaa
ggaaagggcaacaagtctgagctcaacgtgacagaagaagctacaaacctacgtcgtgta
agcgatggcagcgtggaccatgaagagatgaacgacagtacggaaagaggcgagactcta
gaaatgagagaaaacctgcaacgacagctgcaggagatcatgtcagccaccaaactgaca
acaggaaggaggagctcaatcagactggcgaggttgggatcaggaggagccgactcggga
ccacacacacctgaagggagccgagtcggacgaagtggtaacagacgaactctggaagct
ctgagggtgtccagggaagcagctatggacgtgaacacggagccgtctcagagtgagcag
atagtttgggacgaccccacggccagagaggagagggccaagctggccgataacttccag
tggcctggaagcccctcccagcactcggagcccctcgcacatccgcccccccacaccaga
gacaacggacctcagttcagggactcgatgacggactctgagctggtggagatggctgcc
tgtgacgtcattgaccagcagatgggtcagaagatcctgacgcctccatcggaggagtcg
gaaaaagacatcctcacgcctaaagctcccagcatcgccttccctctcgccaatcccccg
gtggcaccggagccccaggaggagaaggaggaagagaaacatccgcccagatttcagctg
tcctccctcagcccccaggagcgcatcgattacagtcacctcatagaggagctcggtggt
gtggttttggacaagcagtcctttgaccccagctgctcccacatcatcgtggggactccg
ctgcgtaacgagaagtatttggcagcgatggccgccgggaaatggatcctgcaccgctcg
tacctggaggcgtgtcgctgcgcaagtcacttcattcaggaggacgagtttgagtggggc
agtggctccatcttggatgcgttgccgtccatcacctcccaacagaagaggctggcgtta
gccgccatgcgctggaggaaaagcctgcagagacgctccgcaccagagggagcgttcagc
ggatggatcgtcctgctgaacatcgaccagagcagagaatcgggcttcaggcggttgctg
caatccggcggggcaaaggtcctgcccagtccctctccatccttatacaaagaggccacc
cacctgttcgcagacttcagcagactaaagcctggagacttcagagtcaacgtatcggag
gccacctcacagggagtcacatgcttgaagccagagtacattgcagactacctcatgcag
gagccggctccgtctatcgagctgtaccagctgactgaagctccctcagaggaagctccg
ggtacgccgtctcgtaaacgtaaagcacccgcagacgcctccaagctgaaaaagagccgc
ctgaactga
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integrated database retrieval system
