Mugil cephalus (flathead mullet): 124996780
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Entry
124996780 CDS
T08342
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124996780 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcep03019
]
124996780 (mtrex)
03041 Spliceosome [BR:
mcep03041
]
124996780 (mtrex)
03009 Ribosome biogenesis [BR:
mcep03009
]
124996780 (mtrex)
03016 Transfer RNA biogenesis [BR:
mcep03016
]
124996780 (mtrex)
Enzymes [BR:
mcep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124996780 (mtrex)
Messenger RNA biogenesis [BR:
mcep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
124996780 (mtrex)
Spliceosome [BR:
mcep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124996780 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
124996780 (mtrex)
Ribosome biogenesis [BR:
mcep03009
]
Eukaryotic type
Pre-60S particles
Helicases
124996780 (mtrex)
Transfer RNA biogenesis [BR:
mcep03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
124996780 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
124996780
NCBI-ProteinID:
XP_047426042
LinkDB
All DBs
Position
19:7542537..7562173
Genome browser
AA seq
1037 aa
AA seq
DB search
MADAFGDGLFSVFDDEQQTSTSKKTPTSVPTETGKAVGKNDSDKDAGPSPRVKREADSDG
GEEVVFGKKPRIEAVSANDLNLAEFMPQVKVEQVETVEGCSHEVALPANEEYKPLKSRVG
KAAKEYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVI
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGNSGGGGKWDPRGR
KGGTKGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNKDEEKRLVEEVF
NNAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATET
FAMGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMS
PAVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEK
IKKLEEQYHTIEIPNEESVVTYFKIRQQLAKLAKEIQEFIHKPKYCLPFLQPGRLVKVKN
EDADFGWGVVVNFCKKTNQKTSTDSEPLYVVEVLVHCSKDSVKDAATEAAKPAAPGETGE
MQVVPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGI
KDPALKKVIQKVEAFEHRMYSHPLHSDPNLESVYSLCERKALLAADVRTAKRELKKARTV
LQMDKLKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMIFNGLFNDLTAEQA
TALLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLGQFKPH
LMDVVFAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAE
GITKIKRDIVFAASLYL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacggcttgttcagcgtgtttgacgatgaacaacaaacttcc
acaagcaaaaagacaccaacgagcgtgcccacggaaacggggaaagctgtaggtaaaaat
gactctgacaaagatgctggtccatccccgcgggtcaagagggaggcagacagtgacgga
ggagaggaggtggtgtttggaaagaaacctcgaattgaggcggtctccgctaacgaccta
aaccttgcagaatttatgcctcaagtgaaggtggagcaagttgaaactgttgaaggatgc
tcacacgaggtggccctgcctgctaatgaagagtataaaccactaaaatcacgagtgggg
aaagcagccaaggagtatccttttgttctcgatcccttccagcgtgaagccatcttatgc
attgacaacaaccagtctgtgcttgtgtctgctcacacgtctgctggcaagactgtttgc
gctgaatatgccattgcactggctctcagagagaagcagagagtgatcttcaccagcccc
atcaaggccctctccaaccagaagtacagagaaatgtacgaagagttccaggatgtggga
ctgatgaccggtgacgtcaccatcaaccccactgcttcttgtctcgtcatgacaacagag
atcctgaggagcatgctctaccggggctctgagatcatgagggaagtggcgtgggtcatc
tttgacgagatccactacatgagagacgcagagcgtggtgtggtgtgggaggaaaccatc
atccttcttcctgacaatgtgcattacgtcttcctgtcggccaccatccccaacgccaaa
cagtttgcagagtggatttgccacttacataaacaaccatgccatgtcgtctacacagac
taccgccccactccgctgcaacactacatctttccagcagggggcgacggactccacctg
gtggttgatgagaacggagatttcagagaagacaatttcaacacagctatgcaggtgctg
agagacgctggggattctgggaacagcggtggaggtggcaagtgggacccaagaggacgg
aaaggaggcactaaaggtccgtccagcgtgttcaaaatagtgaagatgatcatggagagg
aacttccagcctgtcatcatattcagcttcagcaagaaggagtgcgaggcctacgctttg
caggtggccaagctggactttaacaaagatgaggagaaacgtctggtggaagaagtgttc
aacaatgcagtggactgtctctctgatgaagacaagaaactgcctcaggtggaacatgtg
ctgccgctgttgaagagggggatcgggatccatcatggaggcctgctgcccatcctgaag
gagaccatagagatccttttctctgaaggtcttctcaaggctctgtttgccacagagacg
ttcgccatgggcatcaacatgccggctcggaccgtgctcttcaccagcgcacgcaaattc
gatggcaagaatcaccgctttattacatcaggtgagtacatccagatgtctgggcgcgct
gggaggagaggaatggacgacagggggatcgttattttcatggtggacgagaagatgagt
ccagctgtgggcaaacagctactaaagggctcagcagaccctttgaacagcgccttccat
ctgacctacaacatggtgctcaacctgctgcgagtggaggagatcaacccagaatacatg
ctggagaagtctttctaccagttccagcactacagagctctgcctggtgtagtggagaaa
atcaagaagttggaggagcagtaccacaccattgagatccccaatgaagagagcgtggtc
acttactttaaaatcagacagcagctggccaagctggctaaagagatccaagagttcatc
cacaaacccaagtactgcttacccttcctgcagcctggacgacttgtcaaggtaaaaaac
gaagacgctgacttcggctggggagtcgttgtaaacttttgcaagaagaccaaccaaaaa
accagcacagactcagagccattgtacgtggtggaggttttggtccattgcagcaaggac
agtgtcaaagacgctgccactgaggcggctaaacctgcagctccgggggagactggggag
atgcaggtggttccagtgatgctccatctcctcacttccatcagctcagttcgtctttac
atccccaaagacctgaggccctttgacaacagacagttgatgcttaaatctatacaggag
gtgcagaaacgtttccctgatggcgttcctctgctcgaccccatagacgacatgggcatc
aaagaccccgctctgaagaaggtcattcagaaggtggaggccttcgagcaccgcatgtac
tcccaccctctgcacagcgaccccaacttagaatcggtctattctctctgtgagaggaaa
gctctgctcgcagcagacgttcgaacggccaaacgagagctgaagaaagctcggaccgtc
ctgcagatggacaagctgaaatgcaggaagagagtcctgagaagactcggcttcgccagt
ccctcagatgtcatcgagatgaaggggagggtcgcttgtgaaatcagcagcgctgacgag
ctgctgctgacggagatgatcttcaacggcctcttcaacgacctgacggcggagcaagcc
accgccctgctgtcctgctttgtcttccaggaaaacgccagcgagatgccaaaactgact
gaacaactggccgccccgctgagacaaatgcaggagtgtgcgaagcgcatcgccaaagtg
tcggcggacgccaagctggaggtggacgaggagacgtacctgggccagttcaaaccgcac
ctgatggacgtggtcttcgcttgggctaacggggccacgtttgctcagatctgcaagatg
accgacgtctttgaagggagcatcatccgctgcatgcgccgtctggaggaggttctacgt
cagatgtgctcagcagccaaagccattggcaacactgagctggagaacaagtttgctgaa
ggaataacaaagatcaagagagacatcgtgtttgcggccagtctttacttgtag
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integrated database retrieval system
