Mugil cephalus (flathead mullet): 124997466
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Entry
124997466 CDS
T08342
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124997466 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcep03019
]
124997466 (xab2)
03041 Spliceosome [BR:
mcep03041
]
124997466 (xab2)
Messenger RNA biogenesis [BR:
mcep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124997466 (xab2)
Spliceosome [BR:
mcep03041
]
Complex B
Other components
Prp19-related factors
124997466 (xab2)
Complex C
124997466 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
NRDE-2
TPR_1
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
124997466
NCBI-ProteinID:
XP_047427136
LinkDB
All DBs
Position
20:complement(15131553..15138288)
Genome browser
AA seq
849 aa
AA seq
DB search
MHSVNGKADVKFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKTTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPSFEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAIVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQDEEDDIDMELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGTPRQIINTYTEAVQTVDPLKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETDERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTATFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEINIDDEDEDEDEDQGPDEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgcattcggtaaacggaaaagcggatgttaagtttgaggacgatgatttgccttatgaa
gaggagatcatcaggaatccgtattcagtcaagtgctggatgcgttacattgaattcaaa
cagaatggagccaaaaccaccctcaacatgatctatgagcgggctctgaaagagctacct
ggcagctataagttgtggtacaattacctgagagagagacggaaacaagttaaaggaaaa
tgcatcactgaaccatcttttgaagaggtcaataattgccacgaaagggcgctggtgttc
atgcataagatgcccaggatatggctcgattactgccagttcctcgtgtctcaatgcaag
atcacaagaagtcggcgcacattcgaccgtgcgctcagagctctccctgtgactcagcac
cctcgcatctggcccctgtatctccgctttgtccgtaacctgcccctgcctgagacagcc
atccgggtgtaccgcaggtacctcaagctttctccagagaatgcagaggaatacatagac
tacttacgatctgtcggacgcttggatgaagcagctgtgcgactggcagctattgtcaat
gatgaaagctttgtatctaaagagggcaagtctaactaccaactgtggcatgagctttgc
gacctgatctcccagaatcccgacaaggtcacctctttgaacgtaggagccatcatccga
ggaggcctgacccgcttcacagaccaacttggaaaactctggtgctccttagccgactat
tacatcaggagtggtcactttgagaaggcacgtgatgtgtatgaggaggccattctgaca
gtggtgacagtgagggatttcacacaagtgtttgatagttacgctcagtttgaggagagc
atgatagctgccaagatggagaccactgcagagatggggcaggatgaagaagacgacata
gacatggagcttagactggcccgatttgagcagctgatagctcgacgccctctcttgctg
aatagtgtgctactgagacagaacccccataatgttcatgaatggcacaagcgagtgaag
ctgtacgagggaactccacggcagatcatcaacacatacacagaggcagtgcagactgtg
gatccattgaaggccacggggaagccgcactctctctgggtttcctttgctaagttctat
gaggaaaatgagcagctggacgatgcaagaacaatctttgagaaggctaccaaggtgaac
tacaagcaggtagatgatcttgctgcagtgtggtgtgaatacggagagatggagctccgc
cacgagaactacgaacaggctctacgcatactgaggaaagctacagccattccatccaag
aaggcagagtactttgatgcctctgaaccagtccagaacagagtctacaagtctttgaag
gtctggtccatgctggcagacttggaggaaagtctcggcactttccagtctacgaaagcg
gtgtatgatcgcattattgacctgcgcatcgccactccacagatcatcatcaattatgcc
atgttccttgaagagcacaactactttgaagaaagctttaaagcttatgagcgtggtatc
gctctcttcaggtggcccaacgtttatgacatctggaacacgtacctcacaaagttcatt
gaccgctatgggggcaagaagttggagcgtgccagagatttatttgagcaagcgctggat
ggctgccctgccaagtttgccaagactatttatctgctgtatgccaaactggaggaggag
tacggactggcgcggcacgccatggccgtctacgagagagctacgcaagcagtggaaacc
gacgagagacatcacatgttcaatatctacattaagagagcagcggaaatttatggagtc
acatatacccgagcgatttaccagaaggctattgaggtccttcccgatgagcatgcaagg
gacatgtgtctccgatttgcggacatggagagtaaactgggtgagattgatcgggccaga
gcgatctactcctactgctctcagatctgcgacccaagggtgacggctactttctggcag
acctggaaagaatttgagatccgccacggaaacgaagacaccattagagagatgttgagg
atcaaacgcagcgtccaggctacgtacaacacccaggtcaacttcatgtcgtctcagatg
ctgaaggccacgacaagctctacaggaactgtgtcagaccttgctcctggccagatggga
attgatgacatgaagatgttggagcagaaagcacaacagcttgctgcggaagctgagcag
gacaaacccaagcccaaagagaagatcctgtttgtcaggagcgacacttctcgcagtgag
ctggctgagctctccaagcaagccaatccagatgagatcaacattgatgatgaggatgaa
gatgaggatgaagaccaaggtccagatgaggtgcaactcgaacagaagagcgtccccaca
gctgtctttggagggcttaaagacgactga
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