Mugil cephalus (flathead mullet): 125001316
Help
Entry
125001316 CDS
T08342
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
125001316 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mcep04121
]
125001316 (slx4)
03400 DNA repair and recombination proteins [BR:
mcep03400
]
125001316 (slx4)
Ubiquitin system [BR:
mcep04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
125001316 (slx4)
DNA repair and recombination proteins [BR:
mcep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
125001316 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-met
zf-C2H2_jaz
zf-C2H2
zf-C2H2_4
zf-C2H2_6
Motif
Other DBs
NCBI-GeneID:
125001316
NCBI-ProteinID:
XP_047433185
LinkDB
All DBs
Position
2:complement(5641820..5652859)
Genome browser
AA seq
1766 aa
AA seq
DB search
MDDSDQDFADLCSKLLKRVRKKPAEARQPAKVEARSSSQASQGDKRRRNNRNGDCGSKLA
ASQPVNAPAEQPVVGGRTGLDSGEAGPSVTYSETVGTAAVQGSGGGLRAKDKVLLKMQQF
KRASPQRMLHADRFTPANHHSDRAPFAQQQGRDNPETLSSGARPKTPDSDEVLAQRLQQE
LDREAAQARTGDLEDRGLFFCQICHRDLSHMSPNGRTQHLNRCLDESEDSAPARPPPPGV
PECPICGKKFKSQKSRSAHLKRCSAEMGVSSAELLQALQRQAVESRSTATANPLMQTAGT
KRKGPSKPALPASKKPRKKTKPMDEETMVALALSSSLLEQERKQLREEEEAERQTEAAAA
HTSMTSLLKWRPDTGKGRGKRKKGAVPRAPPLLLVQDAEVALRRLQDRVSALLLLSPPPS
PPTPTRCTSTLPGWTGAAPLWQKSALMDDDSDFYVPELREFLTPPDDAVSFDTCNKPESS
VQPEGKGTPVRESRDSILLSSSKVTSCSPAASTPGTTQLPVGSQTLKDLMELTEEGITLT
QYGKTAKVSADQQTNAGLSANIRLSGFIPEEAAAQDDLGVSGFVPEMANTHSKDAHGPAE
RLDDQARADHNRGSHQSAALSRLASDLSSMVNNPQLSDVQLQVDSGEVYFAHSFMVYARC
PLLAEMVHESGFGVQEEGMPASQRVLMSDVPGEAVFTLLRYLYTARCSIPASLRPHVLEL
ASRFDLQELQQLCQLHREEADDVNQEENVCTQTDEAFTELLRSMWNDGEEDGDGVLSDGG
RDEENCPEEDCLAEEVMTRNGEICEERVNEEELEEIYEFAATQRQREEKDSEEEEEEEEE
ERVDGKGDEEAVFTKLAEPKNGKSQQSNFQLETNPSLDRSYNRLFSDSWGVCEEGEPVSS
ASTSGPPKTDHPQSQQHKSPPKPSSELSARALLQSSASAVYDISISPTHSASNLPFPGLS
PGLVETGDAVGLDVPKEGSPLKRESQGPRSICAPLSPDTPQKKEEPELIVLSDSSDELEM
EVDGAGLSPPCPLPHSPCSPQKIQSYTEVKSRRIQSPIKPTSVNKESISFQFSPGDPPDC
SPEVSWLIPSTPPVQSTRSGSTQTKSSMCRTQLFPKGRNSALSSSDFSSPALPFKLHTSS
SPVCAHVDPAGGRVSRLRQDGTGLSSSRLDLSGSPKKSSSFNLSRDRDVFAVPLSQPKLS
NLSDLTNSTPLHLKQQPYSSTPLHTDLHQPPVLSLSSSLSSDTDTHKLSGQRSEGAPSES
LEKTESGSFHLSPLSGPSDPPSSSSNSGLQSSKRKSSSQSPRSVRSSRHDDAGVKLMRRE
GTNEEGERHADSGDEDRGDRRREESKGGSGEADNAESSYNQSFMDEPPMAFNDSWGLDVG
VEANPGRFSLRLEDSGRSSQQERSPGQRGPARSSTSPITQPPPPSSHSVRTLNSCNGAAC
RSSRKGDSPQAQTNPSSSPSPPDPNARATPEVDNGLLDSKIWESWEEEGEEEEALPLFQR
VNPSVQRKTPVSSHNKRRRTMVPITPMPHYSDMDTPELKNKVSRFGIRPLPKRQMILKLK
EIHQYTHQLVSSDSEDEAPPAAQMKPPPGRTTSCAQTVKFKEPTAPAVLSPLKQRREEEE
AEPLSASQGSNASSTAASEESERSNPELCISSEGDSDSDGGISCSQAASRLQDRLLAVRS
FILSDPGLYSQILQYQPLVLSQLQQRLKAAGIRLGAAKLVDYLDSQCITFTTAKPGHSAP
GRRRAKQTRAAGDRGASRKKAVTALI
NT seq
5301 nt
NT seq
+upstream
nt +downstream
nt
atggacgactcggaccaggattttgcagacctctgctcgaagctgctgaaaagagtccgt
aagaaacctgctgaagcaagacaacccgcgaaagtagaagctcggagctccagccaagca
agccaaggagacaagaggaggagaaataatagaaatggtgactgtgggtccaagttggct
gctagccaacccgtcaatgctccagcagagcagcctgtggtcggggggaggaccgggctt
gactcgggagaggctggaccctcagtcacatactctgaaacggtgggaacagcagcggtg
caggggagcggtggaggtctacgagcgaaagacaaagtcctgctgaaaatgcagcagttc
aagagagccagtccacagaggatgctgcacgcagaccgcttcactccagccaaccaccac
agcgaccgggctccttttgcacagcagcaaggacgagataatccagagacgctcagttct
ggggctcgtccaaagactccagacagcgacgaggttctggcccagcggctgcagcaggag
ctggacagagaggcagcacaggcccggacaggggacttggaggacagaggccttttcttc
tgtcaaatctgtcacagagacttatcacacatgagccctaacggacgcacacagcacctc
aacaggtgtttagatgagagtgaagacagcgcccctgcccgccctccgcctcctggcgtc
cccgagtgtcctatctgtggaaagaagttcaagtctcagaagagccgctcggcccatctg
aagcgctgctccgcggaaatgggcgtctcgtcggccgagctgctgcaggctctgcagaga
caggctgtggagagccgcagcaccgcaactgccaacccactcatgcaaactgcaggcacg
aaaaggaaaggcccgtctaagccggccctcccagcgagcaagaagcccaggaagaagact
aagcccatggatgaagagaccatggtggctctggctctgtcctcctcgttgcttgaacaa
gagaggaagcagctgagagaggaggaggaggcagagagacaaacagaagctgcagctgct
cacacctccatgacttccctgctgaagtggagaccagatacaggtaaggggcgtggaaag
aggaaaaaaggggccgtccctcgtgctcctccactcctcctggtccaggatgctgaagtg
gccctgaggaggctgcaggatcgcgtctcagctcttctcctactcagcccgccgccctct
ccccctacccccacccgttgcaccagcactctgcctggctggacaggtgctgcccccctc
tggcagaaaagcgcactgatggatgacgactctgatttctacgttccagagctcagggag
ttcttgacaccaccggatgatgccgtctcattcgacacctgcaacaaacctgagtcttct
gtccagcctgaggggaaaggaactcccgtcagagagagcagggactccatcctactatct
tcttctaaggtcacctcctgctccccagctgcctccacccctgggacgacgcagctccct
gtgggcagccagactctgaaagacctgatggagttgactgaagaaggcataaccctcaca
cagtatggaaagactgccaaagtttctgcagaccagcagacaaacgcaggtctgtccgca
aacatccgtctgagcggtttcatcccggaggaggcagcggcgcaggacgacctcggtgtt
agtggcttcgtgcctgaaatggcaaacacccactcgaaggacgcccacgggccagcagag
aggctggatgatcaggccagagcagatcacaacagaggcagccatcaatcggcggcgctg
tccaggctggcgtctgacctgagcagtatggtgaacaaccctcagctcagtgacgtgcag
ctccaggtggacagtggagaggtgtactttgcacattccttcatggtgtacgctcgctgc
cccctgctggctgaaatggtgcatgaaagcggatttggcgtgcaggaggaaggcatgcct
gcctcccagcgggtgttgatgagtgacgtcccgggcgaggcggtgttcactctgctgcgt
tacctctacacagcccgctgctccatcccagcatcactgcggccccatgtcctggagctg
gcatccaggtttgacttgcaggagctgcagcagctttgtcagctccaccgagaggaggcg
gacgacgtgaaccaggaggagaacgtctgcacgcaaacagacgaggctttcacagagctc
ctccgctccatgtggaacgacggggaggaagatggcgacggggttctttcagacggagga
agggatgaagagaattgccctgaagaggactgtctagctgaagaggtcatgacgaggaat
ggagagatttgtgaggagcgtgtgaatgaggaagagctggaggagatctacgagtttgcc
gccacgcagagacaaagggaggaaaaagacagcgaagaggaggaggaggaggaggaggag
gagagggtagatgggaaaggagacgaggaagccgtattcacaaaactggcagaacccaaa
aatggaaaaagccaacagtcaaactttcagcttgaaacaaaccccagcctcgatcgcagc
tacaaccgcctcttctcagactcatggggggtttgtgaggaaggagaacccgtctcctct
gcctctacctctggtccaccaaagacagaccatcctcagtcccagcagcacaagtctcct
cctaaaccatcctctgaactgtctgccagagctttgcttcagtcttcagcgagcgcagtc
tacgacatttccatcagccctacacacagtgcgtccaaccttcccttccccggcctgtcc
cccggtctagtggagacgggagatgctgttggactggacgtgcctaaagagggttcgcct
ttgaagcgtgaaagccaaggtcctcgtagtatttgtgcccctctttctcctgatacacca
cagaaaaaagaggaacctgagctcatagttttgtccgactctagcgacgagttggagatg
gaggtggacggtgcaggtctcagtcccccgtgtcctttgccacattctccctgctccccc
cagaaaatacaaagctacacagaggtcaaatccaggcgcattcagtcacctatcaaacct
acttctgtgaataaggagtccatcagcttccagttcagtcctggtgatccacctgattgt
tctccagaggtttcctggctgatcccgtccacgccgccggtccagtccacgaggagcggc
tccactcagaccaagagcagcatgtgcaggacgcagctcttccctaaaggtcgcaactcc
gcgctgtcgtcttcagatttctcttctcctgctttaccgtttaagcttcacacctccagt
agcccagtttgtgcccacgttgacccagcagggggccgcgtctccaggttgaggcaggac
gggacaggtctcagtagctccagattggatctcagcggttcgcctaaaaaaagctccagt
tttaatttaagtagggatagagatgtgtttgcagttcctctgtcacaacctaagctttca
aacctctcagacttgactaacagtacccctctccacctgaagcagcaaccttacagcagc
actccccttcatacagatctccaccagcctcctgtcctttcactttcctcttcactcagc
tctgatactgacacccacaagctgtcaggtcaaaggagtgagggggccccctcagaaagc
ctggagaagacggagtcagggagctttcatctctcccctctgtccggcccttcagaccca
ccctcatcttcctctaacagtggtcttcaaagctcaaaaaggaagtcctccagtcaaagt
ccacgttctgttcggtccagcagacacgacgacgcaggagttaagctgatgaggagagaa
ggaacaaacgaggaaggagaaagacacgcagactccggtgatgaggacaggggcgacaga
aggcgggaggaatcaaaaggaggatctggagaggcagacaatgcagaatccagttacaac
caaagtttcatggacgagcctcccatggcgttcaacgactcgtggggcctcgacgtcggc
gtggaggccaacccgggacgcttcagtctgaggctggaggacagcggacgctcgagccag
caagagcggagcccgggacaacgaggaccagccaggtcctcaacgtctcccatcactcaa
cctcctccaccctccagtcacagcgtccggacactgaacagctgtaacggcgcagcatgc
cgctcttcacgtaaaggtgacagcccacaagcacagaccaacccctcctccagcccctca
ccacctgaccccaacgcacgggccacaccagaggtggacaacggcctcctggactccaaa
atatgggagagctgggaggaggagggagaggaggaggaggctcttcctctctttcagagg
gtgaacccttccgtccagcgcaaaaccccagtgtcctcacacaacaaaaggagacgcacc
atggtgcccatcactcccatgccccactactctgacatggacacaccggagctcaagaac
aaagtcagcaggtttggtatccggcctctaccgaagcgccagatgatccttaaactgaag
gagatccaccagtacacgcaccagctggtcagctcggactcagaggatgaggcgccgccc
gcagctcagatgaagccccctcccggcaggaccacctcctgcgcccagacggtgaagttt
aaagaacccacagcacctgctgtcctgtcccccctgaaacagaggagagaagaggaggag
gcagagccgctgtccgcctcgcagggctccaacgcctcctcaactgccgccagcgaagaa
tctgaaaggtcaaacccagagttgtgcatttcctctgaaggcgactcggacagcgatggt
ggcatctcgtgctcccaggcagcgtcccgcctccaggaccgcctcctggcagtgcgctcc
ttcatcctgtccgaccccggcctgtacagtcagatcctccagtaccagcccctggtcctg
tcccagcttcagcagcgcctcaaggcggctgggatccgcctcggtgccgccaagctcgtg
gactacctggactctcagtgcatcaccttcaccacggccaagccgggccactccgccccc
ggccgcaggcgagccaagcagacaagagcagccggtgacagaggagcgagcaggaaaaaa
gcggttacagccttaatttaa
DBGET
integrated database retrieval system
