Mugil cephalus (flathead mullet): 125003754
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Entry
125003754 CDS
T08342
Symbol
col17a1a
Name
(RefSeq) collagen, type XVII, alpha 1a isoform X1
KO
K07603
collagen type XVII alpha
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
125003754 (col17a1a)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
CEP76_N
Motif
Other DBs
NCBI-GeneID:
125003754
NCBI-ProteinID:
XP_047433851
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Position
2:complement(12274825..12293767)
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AA seq
1640 aa
AA seq
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MDNLTTVKSFSSGGGAGGSSKVVTKSVTTTRLTSQSDVSLSASGSGGRSASGGSTSTSSS
VLITSSSSGGSGASKDVTAVGAFSAAGGGSLASGAGEGVRAGRGGSSTTSYCSSGSGRER
KTEGGLGAVTVSTVSKTSYSSGGSREAKKGSSSSANAYSPAPKERKSVTTMAAALSDVFD
DSSSTNSSPEFNRKEYGTSFATRGRSQSRESEIRARLQSASPPASWTELDDVKRLLRGNH
STSTSPAQSPNNTLPIPRKASVETRAMSESSSTEQYGSIWSGGVPSGYSYNTHHSNLSPT
STLYQSGSGVQNNLTPSSPSAITGLSASSSVYGVQNNLVTTSPTVLSPSGANTHIVYGVQ
KNVSTTVRPSSPISDEASGKDFKFVLIEKENIPLKKETERLVMAKDTGKQFMSAPATSST
FAAYPDDSLKREKQKLSSSSVEEGTDPKSSTLKIPTKDKATYAEIRKDESGFGFCSCCSW
WKWLLGLLLSLLFLLGLLFGLIALGEEVKRLKNRVEALETVTGTASARSSRLSASSGTNI
IDPLDSAYVERSSSGSTLTRSDNVINLGAAGPGGGAGLGQDSAALQRAVEQMVRAELRSS
SVRESLAYSLKGERGEPGPKGDQGALGQKGDSGFPGLPGPPGQTGHPGLDGPRGPKGSAG
EQGPEGPPGQRGRDGLMGPRGEAGPAGFGEKGDKGSQGEPGRPGLVGAIGPVGPKGPMGE
QGAPGSPGAPGIKGFQGEGGAPGGKGDRGTPGLPGIKGDLGERGPRGPAGEPGQPGLQGP
AGPKGSKGIAGDAGSMGLPGVRGPPGLSGDVGPAGPPGSQGPPGIAGIPGVPGSKGEPGS
PGKVIAPVGSDTVAIPGPPGPAGPPGPAGTPGLSGPIGPAGVPGQPGPKGDRGDKGEKGE
RGEKGEKGEVGEKGGQGRRSDVGGSGIDMVGRPGPPGPPGLPGAPGPEGPPGETKQGPPG
RRGPPGEPGVGKPGPPGEKGEPGSFVPTSETFFAGPPGPPGLPGPPGFTGDQGPRGYQGE
PGQPGLPGSPGEPGVGIPGPRGPPGPQGPKGDAGFATGRSFSPGPPGPPGQPGPPGRDGS
ASGSVDVGQYIAEYLQRGGAREYLAGPPGPPGPPGAPGTAEPAGDRLVDDVANRVIAYIQ
STGRGNNGSPGPPGPPGAPGTPGPAGDGLVDDVASRVISYIQSSGRGHDRTPGPPGPPGP
PGSVSVNDIINLLQREDVRRYVAGPPGPPGPPGDPGLGSYNFNTQDVAERVLSLMNERGG
VVAPGPPGPAGPPGPPGPAGLPGNSLSSARSTLVGPQGPPGNPGPPGQPGPAGPPGPPGF
GNHISSDMRDYLQSVAFRGLPGPPGPPGPEGPPGPIGRLVSFTDHQNRETHKAERQEYIK
TEGFSGSMFGVPGLPGPPGPPGHKGEPGTPGSREWSLESGDYANMALKVTDYIKSHGLLR
DVVRDSEHVVRGPPGPPGLPGTPGQSRWVSSRENLADVVEYIKSRGVLDDIMRDYNSRAF
QGPPGPPGPPGPQGYNSGYSPFGNTTELIEYIKSRLRDIERNFNARVIKGPQGPPGPPGP
PGYSRLFGSHTNMTDLVEYFKTHGAIVGPPGRPGQKGEMGIPGPKGERGERGYPGPEGHR
GPKGDRGEFSRTRKRRDAGV
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atggacaacctaacgacggtcaagtcgttcagttcaggaggaggggctggaggaagcagc
aaagtggtcacaaaatcagtaacgactactaggctgacatcacagagtgatgtttctctg
agtgcgagtggctcaggaggaagatctgcctcaggaggctccaccagcacaagtagctca
gttctgatcacatccagcagctccggtggctcaggagccagcaaagacgtcaccgctgta
ggggctttctctgctgcaggtggagggagtctggcgtcgggggcaggggaaggggtcagg
gctggtagaggggggtcctctaccacgtcttattgctcttcaggtagtggcagagagcgg
aaaacggaagggggcctcggagccgtgacggtttccacagtgtccaagaccagctacagt
tcaggaggatccagagaagccaagaaggggtcgtcatcctctgccaacgcgtactcacct
gctccaaaggagaggaaaagcgtgaccaccatggcagcagctctgtcagatgtctttgac
gacagctcaagtacaaactcctctcctgagttcaacagaaaggagtacggtacaagtttt
gccactagagggagaagtcagagccgagagagtgaaatcagagccagacttcagagtgct
tcacctcctgcaagctggacggagctggacgacgtgaagcgcctcctgagaggaaaccac
tccaccagcaccagtcccgctcagtcccccaacaacacgctgcccatccccagaaaggcc
agtgtggaaactagggccatgtctgagagctccagcacagagcagtatggcagcatttgg
agtggaggtgtccccagtggatacagttacaacacccaccacagcaacctgtcccctacc
tccaccctttaccagtcaggttctggagtccagaacaacctgacacccagctctccctct
gcaatcactggactatctgccagcagctctgtgtatggtgtgcaaaataacctggtcact
accagccccactgtcctctctccctctggagccaacacacacatagtttatggtgtgcaa
aaaaatgtctcaaccacagtgagacccagcagtcccatcagtgacgaggcctcaggaaaa
gactttaagttcgtgctgatcgagaaggagaacattcctttgaagaaggagacggagcgg
ctggtcatggccaaagacaccgggaagcagttcatgtctgctcctgcaacttctagtact
tttgctgcctaccctgacgactcactgaagagagagaaacagaaactctcatccagctca
gtggaggaaggaactgatcccaaatcgtctaccctgaagattcccacaaaagacaaagcc
acctatgcagagatccgtaaagatgaatcaggtttcggcttctgctcctgctgcagctgg
tggaagtggctcctgggcctcctgctctccttgctattcctcctcggcctcctgtttgga
ctcattgctttgggtgaagaagtgaaacgtcttaagaaccgcgttgaagctttggaaacg
gtcaccggcacggcgtcagccaggtccagccgcttgtcagcctcttctggcaccaacatc
atcgacccattggactcagcttatgttgagaggagctcctctggttctacactgacgcgc
tctgacaacgtgatcaacctgggggctgctgggccaggaggaggcgcaggtctgggtcaa
gacagcgctgccctgcaaagagccgttgagcagatggtcagggccgaactccgttcaagt
tctgtaagagaaagtctggcatactcactgaaaggggagagaggagagccaggacctaaa
ggtgatcaaggagcattgggacaaaaaggtgacagcggttttcctggcctgcccggtcct
ccaggacagacagggcaccccggattagatggaccaagaggaccaaagggaagcgcaggt
gaacaaggcccagagggaccaccaggccagaggggccgggatggattgatgggcccccga
ggagaagctggacctgctggttttggagagaaaggagataaaggatctcaaggtgaacct
ggacgtcctggtctggttggtgctattggacctgtgggtccaaaaggtcccatgggagag
cagggtgctccaggaagtcctggtgctcctggtatcaagggtttccagggtgaaggtgga
gctccaggaggcaaaggtgaccgaggaacaccagggctgccaggaatcaaaggagatctt
ggagagagggggccacgtggaccagcaggtgaaccaggacaacctggattacaaggccct
gctggaccaaagggatctaagggaattgcaggtgacgcaggttcaatgggacttcctggt
gtgagaggaccacctggactttctggagatgttggtcctgcaggccctccagggtcacag
ggacccccaggtattgcaggaatcccaggagtacctggtagtaaaggagaaccagggtca
cctggtaaagtcatcgctccagttggctctgatactgtagccatccctggtcccccgggg
ccagctggacctccaggtcctgctggaacccccggtctatctggtcccattggtcctgct
ggtgtcccaggtcaaccaggtcccaagggagatcgaggagacaaaggagaaaaaggagaa
agaggagaaaagggagaaaagggagaagttggggagaaagggggtcaaggaagacgtagt
gatgtcggtggcagtggaatcgacatggttggacgtcctggcccaccaggacctccaggg
cttcctggagcgcctggtcccgaaggtcctcctggtgagacaaagcagggtccaccagga
cgcagaggtcctccaggagagccaggggttggtaaacctggacctccaggagagaaaggc
gaacctggcagctttgtgcctacatcagaaaccttctttgctggaccaccaggacctcca
ggacttccaggcccaccaggttttacaggtgaccagggaccacgggggtaccaaggtgaa
ccgggacaaccaggtcttccaggaagtccaggagaaccaggagttggaatcccaggacct
aggggacctccagggccacaaggaccaaaaggtgatgcaggatttgccacaggtagatca
tttagtcctggccccccgggccctcctggacaacctggtccacctggaagagatggtagt
gcatctggatcggttgatgtgggccagtacattgcagagtatcttcagaggggtggcgcc
agggagtacctagcgggacctcctggccctccaggtcctcctggggcaccgggcactgct
gagcctgcaggagacagactcgtggatgatgttgccaacagagtcattgcctacattcaa
agtacgggtagaggaaacaatggatctcctgggcctccaggtcctccaggtgcaccaggc
acccctgggcctgcaggtgatgggcttgtagatgacgttgccagccgagtcatttcctac
attcagagctcaggcaggggacatgatcggactcctggtccccctggacctccaggtcca
ccaggctccgtctctgtcaatgacatcatcaacctattacaacgagaagatgtgagaaga
tacgttgctggtccccctggcccaccaggaccccctggagatccaggtcttggcagctac
aacttcaacacccaggatgtggctgaacgtgtcctcagtcttatgaacgagaggggggga
gtagttgctcctggccctcctggacctgctggacctcctggacctcctgggccagctggt
cttcctggaaactcattatcaagtgcacgttccactttggtgggccctcaggggcctcct
ggtaaccctggtccacctggtcagcctggaccagcaggaccacctggaccaccaggattt
gggaaccacatcagctctgatatgcgtgactacctccaaagtgtagccttcagaggcctt
ccaggcccccctggtccccctggcccagaaggccctcctggtccaatcggcagactggtt
tccttcactgatcatcaaaacagagagacacacaaagctgaacgacaagaatacatcaag
actgaaggttttagtggatctatgtttggagttcctggtctgcctggacctcctggacca
ccaggacacaagggagagccaggtacccctgggtccagagagtggagcctggaatctggt
gactacgcgaatatggctctcaaagttactgattacatcaaatcccacggtctgctccgt
gatgttgtaagagactctgaacatgttgttcgaggacctccaggacctccgggccttcca
ggaacacctggacagagccgatgggttagttctcgcgaaaatctcgcggatgtggtggaa
tacatcaaatcccgtggtgtactggatgacattatgagggactacaacagtcgtgctttc
caagggcctccaggaccacctgggccaccaggtccccaaggatacaacagtggttatagt
ccatttggaaacaccacagaactgattgaatacatcaaatctcgccttcgggatattgaa
cggaacttcaacgcgcgtgtcatcaagggaccccagggaccccctggtccaccaggtcca
cccggatacagccgactgtttggttcccacaccaacatgactgatttagtggaatacttc
aaaacacatggagccattgtaggaccacccggaagaccaggacagaaaggggaaatggga
atcccgggaccaaaaggagagagaggtgaacgaggctaccctggacccgaaggacacaga
ggaccaaaaggggacagaggagaattctcacggacgagaaaaagaagagatgctggtgtt
tga
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