Mugil cephalus (flathead mullet): 125004084
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Entry
125004084 CDS
T08342
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125004084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcep03041
]
125004084
03009 Ribosome biogenesis [BR:
mcep03009
]
125004084
Enzymes [BR:
mcep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125004084
Spliceosome [BR:
mcep03041
]
Complex A
U1 snRNP components
U1 related factors
125004084
Complex B
125004084
Ribosome biogenesis [BR:
mcep03009
]
Eukaryotic type
Pre-60S particles
Helicases
125004084
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
125004084
NCBI-ProteinID:
XP_047434393
EnsemblRapid:
ENSMGCG00000011684
LinkDB
All DBs
Position
2:complement(3370975..3379046)
Genome browser
AA seq
678 aa
AA seq
DB search
MVCLCRHFLFISPVSISALRLTPRHISRLTFSTNILFSSVVCCTMPGFSDRDRGRDRGYG
GGPPRFGGGGGGNRGGPPPGKFGNPGERLRKKHWNLDELPKFQKNFYQEHPDATRRPLQE
VEQYRRSKEVTVKGRDCPKPIVKFHEAAFPSYVMDVIVKQNWTEPTPIQSQGWPVALSGK
DMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPTRELAQQVQQVAAEYGR
ASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRCTYLVLDEADR
MLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQINIGALQLSANHN
ILQIVDVCSDMEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDELTRRMRRDGWPAMGIH
GDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT
ARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMAEDRGGRGRGGRGGYKDD
RRDRYSGGGRSNFGGGSYRDRDSDRGFGNGPKSAFGGSKAQNGGSYGGNSGHSSGSYGNN
NYSNSNGQGNFGAPSNQVGAFGNQNFQGPPQFGAMQRATQNGMNHPFQFNSQPPPPQAQQ
PPPPPPMVPYPMPPPFPQ
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggtctgcctctgccggcattttctttttatttcaccggtgtcaatttctgccctgaga
ctaactccccgtcatattagccggctgacgttttcaacaaatattttattttcttcagta
gtttgctgcacgatgcctgggttttcagacagagatcgtggcagagacagagggtatggc
ggcggcccccctcgttttggtggcggtggaggagggaacaggggcggacctcccccagga
aagtttggcaaccctggtgagaggctgcgaaagaagcattggaacctcgacgagcttccc
aagtttcaaaagaacttctaccaggaacacccagacgccacccgcagaccacttcaagag
gtcgagcagtacagaagaagcaaagaagttacggtcaaaggcagagattgccccaaacca
attgtaaaattccacgaagcagcatttccaagctacgtcatggatgttattgtcaaacag
aattggactgaaccaactccaatccagtctcaggggtggcctgttgccctgagtggtaaa
gacatggttggcattgctcaaactgggtctgggaaaacgcttgcttatcttctgcctgca
attgtgcacatccaacatcagccattcttggaacatggtgatggaccaatttgcttggtg
ctggcacccacccgtgagctggctcagcaggtgcaacaagtggccgctgagtacggcagg
gcttcccgtctcaagagtacctgcatctatggcggtgcgcccaaagggccccaaatcagg
gatctcgagaggggtgttgagatttgcatcgctaccccaggccgtctcattgatttccta
gaatgtggtaagactaatttgcgtcgttgcacctatctggttctggatgaagctgaccgc
atgctggatatgggatttgaacctcagatccgcaagatagtggaacagattcggccagac
cgtcagaccttgatgtggagcgccacttggcctaaggaggttcgtcagctggctgaggac
ttcctgaaggattatgtccagatcaatattggagcactacagctcagtgctaaccacaac
atcctacagatagttgatgtttgcagtgatatggagaaagaggacaaacttatccgtttg
ctggaggagatcatgagtgaaaaggaaaacaagaccattatttttgtagagactaaacgg
cgttgtgatgagctcaccaggaggatgagaagagatgggtggccagcaatgggtatccat
ggagacaagagccagcaggagagggactgggtcctcaatgagttcagatatggtaaagcg
ccaattctcatcgcaacagatgtggcctcgcgtggcttggatgtggaggatgtcaaattt
gtcatcaattatgactaccctaactcctccgaggattatatccaccgtattggacgcaca
gcccgaagtcaaaaaacgggcacggcctacacattcttcacccccaacaacatgaaacag
gccagtgacctgatctctgtactccgcgaggccaaccaggccattaacccaaagctgatc
cagatggcagaggacagaggaggtcgtggaaggggtggaagaggtggctacaaggatgac
cgtcgggataggtattctgggggtgggaggagtaactttgggggtggtagctacagggac
agggacagtgatagaggatttggcaatgggccgaagagtgcctttggtggcagtaaggcc
caaaatggtggcagctatggaggtaacagtggtcactctagtggtagctatggcaacaac
aactatagcaacagcaacggacagggcaattttggtgccccatcaaaccaggtgggtgcc
tttggtaaccaaaacttccagggcccccctcagttcggggccatgcagagggccactcag
aatggcatgaatcacccattccagttcaactctcagcctccaccaccacaggcacagcag
ccaccacccccaccaccgatggtgccctacccaatgccaccacccttcccacagtag
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