KEGG   Mugil cephalus (flathead mullet): 125005206
Entry
125005206         CDS       T08342                                 
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
mcep  Mugil cephalus (flathead mullet)
Pathway
mcep03420  Nucleotide excision repair
mcep04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:mcep00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    125005206 (ddb1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    125005206 (ddb1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mcep04121]
    125005206 (ddb1)
   03400 DNA repair and recombination proteins [BR:mcep03400]
    125005206 (ddb1)
Ubiquitin system [BR:mcep04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     125005206 (ddb1)
DNA repair and recombination proteins [BR:mcep03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      125005206 (ddb1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      125005206 (ddb1)
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd CPSF_A Beta-prop_RSE1_1st Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 125005206
NCBI-ProteinID: XP_047436289
LinkDB
Position
3:20695930..20746447
AA seq 1140 aa
MSYNYVVTAQKPTAVSACITGHFTSADDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
ISVMELFRPKGESKDLLFILTSKYNACILEYKQTGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVAHQQLIQITSGSVRLVL
QDSKALVSEWKEPQGRNISVAACNHTQVVLAVGRALYYLQILAGELKQISTTEMEHEVAC
LDITPLGDAGGESPLCAVGLWTDISARVLNLPCFTTLHKEMLGGEIIPRSILMTTFEGSY
YLLCALGDGALFYFGLDLQTGALSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRRICYQEVSQCFGVLSSRVEMQDVSGTTSAVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYSLSMVSCRLGKDPSVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTER
KTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcgtacaactacgtggtaacagcccagaagcccacggcggtcagcgcctgcatcaca
ggtcacttcacctcggcggacgacctcaatctgctcatagcaaaaaacacacgcctggag
atctatgtggtcacagcagaggggctgaggcccgtcaaagaagtgggcatgtacggcaaa
atttccgtcatggagcttttccggcccaagggtgagagcaaggatctgctgttcatcctc
acatccaagtacaacgcctgcatccttgagtacaaacagaccggggagagcatcgacatc
atcacccgggctcatggcaacgttcaggatcgcattggacgtccatcggagacgggtatt
atcggcatcgtggaccctgaatgccgcatgattggcctgcggctgtatgacgggctgttc
aaggtgatcccgttggaccgggacaaccgcgagctcaaagctttcaacataagattggag
gagctgcaggtcatcgacgttcacttcctgtacggctgccaggccccaactgtctgcttc
atctaccaggaccctcagggacgacacgtgaagacctacgaggtttctttgagggagaag
gagttcaacaagggcccctggaaacaggagaacgtggaggctgaagcatctatggtcatc
ccagtgccagagccatttggtggcgctataatcataggacaagagtccatcacctaccac
aatggagacaaatacttggccattgcaccgcccactatcaagcaaagcaccattgtctgc
cacaaccgggtggaccccaacggctcccgctacctgctcggggacatggagggacgtctg
ttcatgctgctgttggagaaggaggagcaaatggacggcacggtgacgctcaaagacctg
cacgtggagctgctcggagagacatcaattgctgagtgtctgacctacctggacaatggt
gtggtgtttgtgggctccagactgggcgactctcagttagtgaagctcaacgtggacagc
aacgaccagggctcgtatgtggcagtgatggagaccttcaccaatctgggacccattgtg
gacatgtgtgtggtagacctggagagacaaggccagggccagctggtgacatgctcaggt
gcattcaaagagggctctcttcggatcatccgcaatggcattgggattcacgagcacgcc
agcattgacctgccgggaatcaaaggtttgtggccgctccgctcggaggccggcagagag
acagatgacatgctggtgctgtcttttgtgggtcagacacgcgtgttgatgctgagtgga
gaggaggttgaggagactgaacttccaggctttgtggacaaccagcagaccttttactgt
ggcaacgtggcgcaccagcaactcattcaaatcacatcaggctctgtgcgcctggtgctg
caggacagcaaagccttggtgagtgaatggaaggagccacagggcaggaacatcagcgtg
gctgcctgcaaccacacccaggtggtgctcgctgttggacgggcgctctactacctgcag
atcctcgctggggaactcaaacagatcagcaccacagagatggagcacgaggtggcctgt
ctggacatcacacctctgggggacgccggtggtgagtcaccgctctgcgccgtcggactc
tggacggacatctcggcccgcgtgctcaatctgccctgtttcacaaccctgcacaaggaa
atgctgggtggagagatcatccctcgctcaatcctaatgaccacctttgaaggcagctac
tacctgttgtgtgccctgggggacggagcgctcttttacttcggtctggacctgcagaca
ggcgccctaagcgagcgtaagaaggtcaccctgggcacccagcccacggtgctgaggacc
ttcaggtctctgtccacgtccaacgtcttcgcctgctccgaccggcccaccgtcatctac
tcctccaaccacaagctggtgttctccaacgtcaacctcaaggaggtcaattacatgtgc
ccactcaactccgagggttaccccgacagtctggctctggccaacaacagcactctgact
atcggtaccattgatgagattcagaaacttcacattcgcaccgttcctctttacgagtct
cccaggcggatttgttaccaggaggtttcccagtgtttcggggttctgtccagcagggtg
gagatgcaggatgtgagcggcaccacatctgccgtgcggcccagtgcaagcactcaggct
ctctccagcagcgtgagctccagcaagctcttccccagcagcacctctccccacgagacc
tccttcggtgaagaggtggaggtccacagcctgctggtcgtggatcagcacacctttgaa
gttctccatgcccatcagttcctccccagcgagtactccctcagcatggtgtcgtgtcgt
ctgggaaaggacccgtcggtgtatttcatcgtcggcaccgccatggtttacccggaggag
gccgagcccaagcagggacgcatcattgtcttccactacaccgacggtaagctgcaaacg
gtggctgagaaggaggtgaaaggagccgtctactctatggtggagttcaatggaaaactt
ctggccagcataaacagcacagtccgtctgtacgagtggacggctgagaaggagctcagg
accgagtgcaaccactacaacaacatcatggccctgtacctgaagaccaaaggagacttc
atcctggtgggagacctgatgaggtctgtcctcctgctggcctacaaaccgatggagggc
aactttgaagagattgctcgtgacttcaatcctaactggatgagcgcggttgaaatcctg
gacgacgacaacttcctcggggcggagaacgccttcaacctgttcgtttgccaaaaagac
agtgcggccaccacagacgaggagcggcagcacctgcaggaggtcggggtctttcacctc
ggggagtttgtgaacgtcttctgccacggctcgctggtgctgcagaacctgggcgagagc
tcaacgcccactcagggctccgtgctctttggcaccgttaacggcatgatcggtctggtg
acgtctctgtccgagggctggtacagcctcctgctggacctgcagaaccgcctcaacaag
gtcatcaagagcgtgggcaagatcgagcacagcttctggaggtccttccacacggagcgg
aagacagagcaagccacgggattcatcgacggggacctgattgaaagcttcctggacctc
ggccgggcgaagatgcaggaggtcgtcagcactcttcagatcgatgacggcagcggcatg
aagcgtgaagctacagtggacgaggtgattaagatcgtggaggagctgacgaggatccac
tag

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