Mugil cephalus (flathead mullet): 125006238
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Entry
125006238 CDS
T08342
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep04510
Focal adhesion
mcep04512
ECM-receptor interaction
mcep04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125006238 (col2a1b)
04518 Integrin signaling
125006238 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125006238 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mcep00536
]
125006238 (col2a1b)
Glycosaminoglycan binding proteins [BR:
mcep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125006238 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
125006238
NCBI-ProteinID:
XP_047438079
LinkDB
All DBs
Position
4:8868826..8909237
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AA seq
1491 aa
AA seq
DB search
MFSFMDSRTVLLLVATQVCLLAVVRCQEEDDQEDVFSCIQDGQRYSDKDVWKPEPCRICV
CDTGTILCDEIVCEELKDCPKPEIPFGECCPICAADQTPSIGAPGAKGQKGEPGDITDVV
GPRGPSGPMGPPGEQGARGARGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEAGEPGQS
GPMGPRGPPGPPGKPGDDGEAGKPGKSGERGPAGPQGARGFPGTPGLPGIKGHRGYPGLD
GAKGETGAAGSKGEAGAPGENGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPP
GPVGPSGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIP
GSKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPA
GLQGAPGPQGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGLKGAPGERGPP
GASGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEPGKSGEKGLGGAPGLRGLPGKDGETGPAGPPGPGGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGAAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGTAGAQGPPGLQGMPGERGSAGIPGPKGDRGDIGEKGPE
GASGKDGARGLTGPIGPPGPSGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFA
GPPGADGQPGTKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPSGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGAPGEK
GDPGEDGPPGPLGPSGPQGLAGTRGIVGLPGQRGERGFPGLPGPSGEPGKQGSAGGPGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGATGIKGDRGNTGPAGAPGAPGAPGAP
GPVGPTGKQGDRGESGPQGPAGSPGPAGARGMPGPQGPRGDKGEGGESGERGQKGHRGFT
GLQGLPGPPGQSGDQGATGPAGPAGQRGPPGPVGPAGKDGSNGLPGPIGPPGPRGRSGET
GPSGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVFCN
METGESCVYPKPSSIPRKNWWSSKSKDRKHIWFGETMNGGFHFSYGDDSLAPNTAAIQMT
FLRLLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMDD
GCTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGPDQEFGVDVGSVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactgtactgctacttgtagcaacccaagtttgtcta
ttagccgttgtgagatgtcaggaggaggacgaccaggaggatgtttttagctgtatacag
gatggacaacgttatagtgacaaggacgtatggaaaccggagccttgtcgcatctgtgtg
tgcgacaccggaaccatcctgtgcgatgaaattgtctgcgaggagctaaaagactgcccc
aaacctgaaatccctttcggagagtgttgccccatctgcgctgctgaccagactccatcc
attggagcacctggagctaagggtcagaagggtgaacccggagacattactgatgttgta
ggaccaagaggaccatctggcccaatgggcccaccaggagagcaaggagcccgtggagca
agaggagataagggagagaagggaagtcctggtccccgcggcagagatggcgagcccggc
acccccggaaaccctggccctcctggacctcctggacctaatggaccccccggccttggt
ggaaactttgctgctcagatggccggtggtttcgatgagaaggctggcggcgcacagatg
ggtgtgatgcaaggaccaatgggccctatgggaccgagaggaccacctggccccactggc
gcacctggcccacaaggtttccaaggtaacccaggagaggctggagagcccggacaatct
ggccccatgggcccccgcggcccccctggaccacctggaaaacctggagatgatggtgag
gctggcaaacctggtaaatcaggcgagcgtggacctgccggacctcagggagcccgtgga
ttcccagggactcccggtttgcctggcatcaagggacacagaggttatccaggtcttgac
ggtgcaaagggagagactggagctgctggttctaagggtgaggctggtgctcctggagag
aacggcgctcctggaccaatgggaccccgcggtctacctggtgagagaggacgtcctgga
cccagtggagttgctggagcacgtggaaatgatggcttgcctggtcctgctggtcctcct
gggcctgttggtccttctggagctccaggcttccctggctctcctggtgcaaagggagaa
gccggccctactggtgctcgtggacccgagggtgctcagggaccccgtggagagtctggc
actcctggatctcctggaccttctggcgcttctggcaaccctggtacagatggtatccct
ggatctaaaggatcagctggtgcccctggtatcgctggtgctcctggtttccctggacct
cgtgggccccccggccctcagggagcgactggacctctcgggcctaaaggaacatctgga
gacccaggtattccagggttcaagggagaggctggacccaaaggagaaattggaccagct
ggtcttcagggagcacctggcccacaaggagaagaaggcaagagaggacccagaggtgag
cctggtgctgctggaccacttggacctcctggagagagaggagctcctggtaaccgtggt
ttccctggtcaagatggtctggctggtctcaagggagcccccggtgagcgcggaccccct
ggagccagtggtcccaagggcgccaatggtgacccaggtcgtcctggagagtctggtctt
cctggtgcaaggggcctgactggacgccctggcgatgccggtcctcaaggcaaagttgga
ccttccggagctcctggtgaggatggtcgccccggacctcctgggccacagggagcccgt
ggacagcctggtgtgatgggattccctggacccaagggagcaactggtgagcctggaaag
tctggtgagaaaggactgggtggagctcctggtctgaggggtctgcctggcaaagatgga
gaaaccggacccgctggccccccaggccctggtggccccgctggagagagaggagagcag
ggacagcccggtccctcaggcttccagggtcttcctggaccacctggcccccctggtgag
ggaggaaagcctggagaccagggtgttcccggagagggcggagccgctggtgccactgga
ccccgaggagagcgcggtttccccggagagagaggagctgctggtcctcaaggtctgcag
ggacccagaggtctgcccggaactcctggaaccgacggacccaagggagccattggacct
gctggtactgctggagctcagggaccccccggcctgcagggtatgcctggagagagagga
tctgctggcattcctggccccaaaggagacagaggtgacattggagagaaaggacccgaa
ggtgcttctggcaaagatggtgctagaggtctcactggtcccattggtcctcctggtcca
tctggtcccaatggtgagaagggtgaatctggtcctgctggtccttctggagctcctggt
actcgcggtgctcctggcgacaggggagagactggacctcctggacctgctggttttgct
ggaccccctggtgctgacggtcagcctggaaccaagggagagcagggagaatctggacag
aagggagatgctggtgcccctggaccccaaggaccatccggtgcccctggacctgcaggt
cctacaggtgtttctggacctaaaggtgctcgtggtgctcagggacctcctggagcaact
ggtttccctggagctgctggacgtgttggaccccctggccccaatggtaatcccggaccc
tcaggtcctgctgggcctcctggtaaagatggacccaagggtgtgagaggagacggtgga
cccccaggcagacagggtgatgctgggcttcgtggtcctgctggagctcctggtgagaag
ggagatcctggagaggacggtcctcctggtcccctgggtccttcaggtcctcaaggattg
gctggtacgcgcggtattgtcggtctgcccgggcagcgcggtgagagaggtttccctggt
ctgcctggaccttctggtgagcctggaaagcagggatcggctggtggtcctggagaccgt
ggaccccccggacccgttggacctcctggactcactggacctgctggagagcccggcaga
gagggcaaccctggatctgatggacctcctggtagagatggtgctactggaattaagggt
gatcgtggtaacactggtcctgcaggtgctccaggcgctccaggcgctcccggtgctccc
ggaccagttggtcccaccggcaaacagggagacagaggagagtctggtccacaaggacct
gctggatctccaggacctgccggagccagaggaatgcccggacctcaaggaccccgtggt
gacaagggtgagggtggagaatccggagagagaggacagaagggacacagaggcttcact
ggtctgcagggtctccccggacccccaggtcaatctggagaccagggtgctactggacct
gctggacctgctggacaacgcggaccacctggacctgttggccccgctggaaaggacggt
tcaaacggtctcccaggacccattgggccccctggacctcgtggtcgcagtggagaaacc
ggtccttccggtcctcctggaaaccccggaccccctggtcctcctggtccccccggccct
ggcattgatatgtcagccttcgctggtctgggtcagactgagaagtctcctgatcctctc
aggtacatgagagctgaccaggcctctggaaatctccgtcagcacgatgccgaggtcgat
gccacgctcaaatctctcaacaaccagattgagaacatccgcagccccgagggatccaag
aagaacccagctcgcacctgcagagacctgaagctctgccaccctgactggaagagcgga
gagtattggattgatcccaaccagggctgcaccatcgatgctatcaaggtcttctgcaac
atggagacaggggagtcctgcgtctaccccaagccttccagcatccctcgcaagaactgg
tggtccagcaagagcaaggaccgcaaacacatctggttcggagagacaatgaatggagga
ttccacttcagctacggcgacgacagcctggcacccaacacggctgccattcagatgact
ttcctgaggctgctgtccactgaggcttcccagaacctcacctaccactgtaagaacagc
gtggcctacatggacgcctcaacaggcaacctgaagaaggccgtgctgctgcagggctcc
aacgacgtggagatcagagccgagggcaacagccgcttcacttacagcgtgatggatgac
ggatgcacgaaacacacaggacagtggggcaagacagtgatcgaatacagatcgcagaag
acctcccgtctgcccattgtggacattgcccccatggatattggtggacccgaccaggag
tttggagtcgatgtcgggtcagtctgcttcttgtaa
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integrated database retrieval system
