Mugil cephalus (flathead mullet): 125006346
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Entry
125006346 CDS
T08342
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
mcep
Mugil cephalus (flathead mullet)
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mcep04121
]
125006346 (pdzrn3b)
Enzymes [BR:
mcep01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125006346 (pdzrn3b)
Ubiquitin system [BR:
mcep04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
125006346 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
zf-TRAF
Sina_ZnF
Prok-RING_4
PDZ_Tricorn
zf-rbx1
U-box
zf-RING_6
TRAF3_RING
IBR_1
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
125006346
NCBI-ProteinID:
XP_047438257
LinkDB
All DBs
Position
4:complement(27372795..27470948)
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AA seq
1050 aa
AA seq
DB search
MGFELDRFKGTVDPDFKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQQSSCPVKCQRIS
TKELNHVLPLKNLILKLEIKCDNHARGCDAVVKLQHLAEHAEMCEYSPAKCRNKGCDETL
SLRDMDAHMRETCDYRPVGICEGGCGLMLTHREQRLNSHCCLRALKAHNNALHLKIIILD
REFKKQTIKANKREKSLLAQLSAVHSELQMTALKYQKKFTEYSDRIDSLTKTVAFSCKEG
ETKSVTVVLLREGGSLGFNIIGGRPCADDSDSTSNEGIFVSKIVEQGPADKEGGLLIHDR
IIEVNGKDLSKATHDQAVEAFRTAKEPIMVQVLRRAPYPKLVSPVSDTQVSDISTQTDIT
LQHIMALTKLPPSSPPMTELEEYLLPEEHPAGHEYFDPNDFLEGMQQDIEREELEYEEVD
LYRANIQDKLGLTICYRTDDEDEAGIYISEIDPHSIAAKDGRIREGDKIIQINGVEIQNR
EDAVALLTSEGNQNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
MLQQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENLGDDQTTASNTLG
SCRKLTYSQDTLGSTDLPFSSESFISADYADADFLGITADECERFRELLELKCQMRSGGA
QGLYCQGGGAEGQDPEGVDKELELLNEELRTIELECLNIVRAHKMQQLREQCRESWMLHN
SGFRNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRRA
ENQGPAGPSASTGSNGRLLKPLLSPVQEVCGPSRSRSSSKDLDASPQAESKDRKPGESSK
SGRGFSQPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDAIAPGDLE
PKMEWKVKIRSDGTRYITKRPVRDKLLRERALRIHEERCGMTTDDDAISELKMGRYWSKE
ERKQHAVRAKEQRQRREFMKQSRADCLKEQPGPEDKKEPNIIELSHKKMMKKRNKKIFDN
WMTIQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagctggaccgcttcaaggggaccgtggacccggatttcaaatgcaacttg
tgcaataaagtcctggaggacccgctgacgactccgtgcggccacgtcttctgctccggc
tgcgtgctgccctgggtcgtccagcagagcagctgccccgtcaaatgtcagcggatctcc
accaaagagctgaaccacgtcctgcccctgaaaaacctcatcctgaagctggagatcaaa
tgtgacaaccacgcgcggggctgcgatgcggtggtgaagctgcagcatctggccgagcac
gccgagatgtgcgagtactccccggcgaagtgcaggaataaaggatgcgacgagacgctc
agcctgagggacatggatgctcacatgcgggagacgtgcgactacaggccggtggggatt
tgcgagggcggctgcgggctgatgctcacccaccgggagcagagactgaacagccactgc
tgcctgagagccctgaaggcgcacaacaacgcgctgcacctcaagatcatcatcctggac
agggagttcaagaagcagaccataaaagccaacaagagggagaagtcgctcctggcgcaa
ctttccgccgtgcacagcgagctgcagatgacagcgctgaaatatcagaagaaattcacc
gagtacagcgacaggatcgactccctaaccaagactgtggctttctcctgcaaggagggc
gagactaaaagcgtgacggttgtccttcttcgtgagggcggatctctgggttttaacatc
ataggaggaaggccatgcgcggacgacagtgacagcacttcaaatgaagggatcttcgta
tccaagattgtagagcaaggtccagcagacaaggagggaggccttctaatccacgacaga
ataatagaggtcaatggcaaggacctctccaaggccacccatgaccaggccgtggaggcc
ttccgcacggccaaggagcccatcatggtccaagtcctgcgccgagccccttaccccaaa
ctggtcagccccgtcagcgacacccaggtctcggacatcagcacccagaccgacatcacc
ctccagcacatcatggcgctcaccaagctgcccccctcctcgccccccatgacggagctg
gaggagtatctgcttccagaggagcaccccgctgggcacgagtacttcgaccccaacgac
ttcctcgagggcatgcagcaagacatagagcgcgaggagctggagtacgaggaggtggat
ttgtaccgagccaacatccaagacaagctcggcctgacgatctgttacaggaccgacgac
gaggacgaggcggggatctacattagtgagattgatccgcacagcattgctgcaaaggac
ggtagaatcagagaaggtgacaaaatcatccagataaacggtgttgagatccaaaaccgt
gaggacgccgttgcactactgaccagtgaaggcaaccagaatatctctctgctggtggcc
agaccagagatccagctggacgagggctggatggatgatgacaggaacgacttcctggat
gacctccacatggacatgctggagcagcagcaccatcaggccatgcagttcaccgccagc
atgctgcagcagaagaagcacgaagaggacggaggcaccacggacacggccacgctgctc
tccaaccaccacgagaaggacagcggcgtcggccgcacggacgagagcacgcgaaacgac
gagagctcggagcaggagaacctcggcgacgaccagaccacggcctccaacacgctgggc
agctgcagaaagctgacgtacagccaggacaccctcggcagcaccgacctgcccttcagc
agcgagtcgttcatctcggcggactacgccgacgccgacttcctgggcatcacggccgac
gagtgcgagcgcttccgagaactcctggagctgaagtgtcagatgaggagcggcggagcc
cagggcctgtactgccagggcggaggggcagaaggtcaggacccggagggggtggacaag
gagctggagctgctcaacgaggagctgcgcaccatcgagctggagtgcctgaacatcgtg
cgcgctcacaagatgcagcagctgagggagcagtgccgcgagtcctggatgctccacaac
agcggcttccgcaactacaacaccagcatagatgctcgacgccatgagctgtcagacatc
acagagctgccggagaaatccgacaaggacagctccagcgcctacaacacgggcgagagc
tgccgtagcacccctctgactctggagctgtctccagacaactctcttcgtcggagagca
gagaaccagggtccggccggaccgtcggcctccacgggctccaacggccgactgctcaag
cccctcctgtcccctgtgcaggaagtctgcggccccagccggagcagaagctcctccaaa
gatctggacgcatccccgcaagctgagagcaaggataggaaaccgggagagtccagcaag
agcgggcgtggcttctcccagccacattcaccttacaaacacgctcacataccggcccac
gcccagcactaccaaagctacatgcagctgatccagcagaagtcggccgtggagtacgcc
cagagccagatgagcctggtcagcatgtgccgggacgccatcgcccccggtgacctggag
cccaagatggagtggaaggtgaagatccgcagcgacggcacgcgctacatcacgaagcgg
cccgtccgggacaagctgctgcgggagcgcgccctccggattcacgaggagcgctgcggc
atgaccactgacgacgacgccataagcgagctgaagatgggccgctactggagcaaggag
gagaggaagcagcacgccgtgcgcgccaaggagcagaggcagcggcgcgagttcatgaag
cagagccgggccgactgcctgaaggagcagcccggccccgaggacaaaaaggagcccaac
atcatcgaactcagccacaaaaagatgatgaaaaagaggaataaaaaaatatttgacaac
tggatgaccatccaggaactgctgacccacggtaccaagtcaccagacggcacaagggtt
tacaactcgctcctgtctgtgaccacagtctaa
DBGET
integrated database retrieval system
