Mugil cephalus (flathead mullet): 125006809
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Entry
125006809 CDS
T08342
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep04382
Cornified envelope formation
mcep04510
Focal adhesion
mcep04512
ECM-receptor interaction
mcep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125006809 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125006809 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125006809 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
125006809 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mcep04147
]
125006809 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
mcep00536
]
125006809 (col4a5)
Exosome [BR:
mcep04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125006809 (col4a5)
Glycosaminoglycan binding proteins [BR:
mcep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125006809 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125006809
NCBI-ProteinID:
XP_047439173
LinkDB
All DBs
Position
1:complement(51508963..51553750)
Genome browser
AA seq
1690 aa
AA seq
DB search
MNKDQKSLRQLAAALLFLALCVAVQRSESAACHGCVGSKCDCSGVKGEKGDRGFPGLTGQ
PGVPGFPGPEGPIGPRGEKGSDGPQGLSGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPGP
RGVPGCNGTKGEAGYPGNPGIPGLQGIPGPPGLPGQKGDPGEIISSSRFGEKGGVGFPGL
PGAPGIPGSPGVQGPLGPPGPRGYEGRPGPPGPPGPKGNMGLNFQGPKGEKGEPGLPGPA
GPPGQVGEQKRTPETEIQRGDKGDMGFPGPPGDPGFRGPPGPSGGQKGDKGEPGEAGKRG
KPGKDGDPGPSGYPGIKGEPGLPGSPGRDGERGFKGERGYPGPPGLVLGGNVGSQVGPKG
EPGFPGTPGLKGDRGPQGLTGPPGQPGLPASGGGGLPGPPGFPGERGQKGDTGSPGISLP
GPPGRSGSPGNPGAPGPPGPPGFSSGQNCIQGEPGRPGPQGERGFPGQPGQKGDKGDTCV
NCFGSTSPIPGPPGPQGQPGFPGSPGAPGIKGDRGFPGTPGSSGNPGAPGPPGPVGYPGE
KGDPGDAVTVNGGRGEKGDTGFPGPPGLPGLDGRPGRDGQPGAPGAKGASGSLLVKGERG
LPGDPGAPGIPGDRGPPGPPGFGPQGPPGEKGSQGVSGRSGSPGAPGAKGEPGQTVAEKG
LPGPRGQDGEPGQPGAPGNPGQPGQPGFPGLPGGKGDPGLPGIGLPGPPGAKGFPGIPGQ
PGAPGGPGRPGVDGLPGQPGFPGPKGEPGFGLPGPPGLPGVPGSKGFSGPKGDPGFPGGP
GSPGRSGFDGAPGPKGDAGTPGRPGTPGPPGSTTIGSLGPPGPPGQQGPMGPPGEKGFPG
ANGAKGDPGAPGLDIPGLPGDRGAPGFPGSPGPIGTPGPPGGPGRDGVPGLPGLKGDSGP
MGSPGPSGGPGGPGGPGAPGLKGEPGFPGRDGSPGGPGSKGERGDPGAQGPPGPSLISPV
TKGSKGEPGLPGVAGLPGQKGISGLPGDPGLPGSDGRPGTPGPQGPKGDPGIPGGPGAPG
VPGSKGSMGEMGFPGPSGQKGLPGQPGRSGSPGQPGSPGFPGSKGEPGSAGIGSPGPAGL
KGEPGQPGFPGSPGLKGSPGSPGLPGLPGAPGSKGDPGLPGFQGSPGIPGPKGLDGAPGG
PGLGGSPGRPGEPGRPGSPGLPGEKGQAGRDGIPGPAGVKGEPGLPGYGGPGPSGLPGLP
GAKGDPGLPGPSGRPGFPGPKGDAGFPGSPGSPGNLGPPGPPGQALQGPKGLQGPPGPPG
RAGSTGLPGAPGPEGPRGPAGSGGVKGEKGIPGAPGQPGFPGQKGDAGVPGFPGPSGLPG
GPGIKGDIGLPGVPGFPGTKGDPGLPGRSGPPGAQGDPGNSGPPGEPAIPPAPIVLKGEP
GLPGPPGQPGTRGPSGGPGRDGLPGQPGSPGDPGAEGPPGFNGPPGRKGDPGPAGQPGSP
GYSGPPGSDGPQGPPGLPGSVSASHGFLITRHSQTEEVPGCPDRTNIIYDGYSLLYVQGN
ERAHGQDLGSAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPKSMPMSMDPITGE
GIKPYISRCTVCEAPAMVIAVHSQTIQIPSCPQNWDNLWIGYSFMMHTSAGAEGSGQALA
SPGSCLEEFRSAPFIECHGRGTCNYYSNSYSFWLATVDRSEMFRKPQSETLKAGSLRTRV
SRCVVCMKRT
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagaccagaagagcctgcgacagctcgccgcggctctactcttcctcgccctg
tgcgtcgcggtgcagcgttccgagtctgcggcctgccatggatgtgtgggatccaagtgt
gactgcagtggagtgaaaggagaaaagggtgacaggggtttcccaggtctcaccggacaa
ccaggagttccgggtttccccggaccagaagggccgatcggacccagaggagagaaggga
agtgatggacctcaaggactaagtggtcccaaaggaattagagggcctcctggtttgcca
gggtttccaggaacaccgggacttccaggtctgccagggcaggatggccctcctggtccg
aggggcgtgccgggttgcaatgggacaaagggtgaagcaggttaccctggaaatccaggg
atccctggactgcaaggaatcccaggtccacctggtcttccaggacaaaagggagaccca
ggtgaaataatctcctccagccgctttggagaaaaaggaggagtgggatttcctggactt
ccaggagctcctggcattcctggatctccaggtgtacaaggtccactcggtccccctgga
ccaagaggttatgagggtcgtccaggtccccccggtcctcctggacctaagggaaacatg
ggcttgaatttccaaggacccaaaggagaaaagggtgaaccaggattgccaggaccagct
ggtcctccaggacaggtcggggaacaaaagaggacaccagagacagagattcagcgaggg
gacaagggtgacatgggattccccggtcccccaggagatccaggttttcgaggaccccct
gggccctctggtggacagaagggagacaagggagagccaggagaggcaggcaaacggggc
aaaccaggcaaagatggtgatccaggtccttcaggatacccgggaatcaaaggagaacca
gggctgccaggttctccaggacgagatggagagagagggtttaaaggtgaacgtggatat
cctggccctccaggactggtgcttggcgggaatgttggaagtcaggtcggtccaaaaggt
gagcccgggttccctggaacacctggactcaaaggagatagaggaccacaaggtttaaca
ggacctccaggacaaccaggacttccagccagcggtggtggtggtctgccgggaccacca
ggtttcccaggagagagaggtcaaaagggagacactggcagtccaggcatctctttgcca
ggtcccccaggacgttcaggctcccccggaaatcctggtgcaccagggccccctggacct
ccaggctttagctcaggacaaaactgtatccagggagaacccgggcgtcctggtccacag
ggagagagaggcttccccggacagccaggccagaaaggtgataagggtgacacctgtgtg
aattgctttggaagcacctcacccatccctggacctccaggacctcaaggacagcctgga
ttcccaggatctcctggtgccccaggtatcaaaggagacagaggattcccaggaacacct
ggaagtagcggcaaccctggtgctccaggtcctccaggtcctgtaggctaccctggagag
aagggagaccctggtgatgctgttacagtcaacggtgggaggggtgagaagggtgacact
ggcttccctggaccaccaggtcttcctggcctggatggtcgacctggtcgtgacggacag
cccggcgctcctggagccaaaggcgcttctggttctctgctggtgaaaggagaacgaggt
ctccctggtgacccaggtgcccctggtattccaggagacaggggaccaccaggtccccct
ggctttggacctcaaggacctccaggagagaaaggtagtcagggtgtctcaggaaggtct
ggatctcccggtgcacctggtgcaaaaggtgaaccaggccagacggtagcagagaaaggt
ttaccaggacccagaggacaggatggcgagcctggacagcctggtgcaccaggtaatcca
ggtcagcctgggcagcctggtttccctggcttaccaggagggaagggtgaccctggactc
ccaggcattgggcttccaggaccccctggagctaaagggttcccaggtattcctggtcaa
ccaggagcccctggtggaccgggcagaccaggagtggacggacttcctgggcagccggga
tttcctggacccaagggtgagcctggcttcggacttcctggtcccccaggtttgccaggg
gtacctggatctaaaggcttctctggacctaagggagatcctggtttccctggcggccct
ggttcaccaggacgatccggatttgatggggctccgggaccaaaaggtgacgccggtaca
cctggcagacctggaactcccggtcctcctggatccaccaccattggctcactggggccc
cctggtcctcctggacaacaaggcccgatgggaccaccaggcgagaaaggattccctgga
gcaaatggagcaaagggagaccccggcgctccaggtctagacatcccaggtctaccagga
gacagaggagctcctggtttcccaggttctccaggaccaatcggaaccccaggacctcct
ggaggacctggacgggatggtgtacccggactaccaggtctgaaaggagactcgggtccc
atgggatctccagggccttctggaggaccaggaggccctggagggcccggagctcccgga
cttaaaggtgaacctggattccctggaagagatggctcaccaggtggtcctggtagtaaa
ggagagaggggagatcccggtgcccagggacccccaggacccagcctgatatcaccggtc
acaaagggatccaaaggagagcctggattaccaggtgtagcaggtcttccaggacagaag
ggtatctctggtctccctggtgacccgggactgccaggatcagatgggcgccccggaacc
cccggaccacaaggtcctaagggagatcctggaatcccaggaggtccaggtgcacctgga
gttccaggatcaaaaggcagtatgggagaaatgggattcccaggtccatcaggacagaag
ggtcttccaggacagccaggtagatcaggatctccaggacagccaggttcacctggtttc
cctggatccaaaggggaaccaggttctgctgggatcggatcacctggaccagctggactc
aagggtgagccaggacagccagggtttccaggaagtccaggactgaaaggaagcccagga
tcgcccggtcttccaggtttaccaggagcaccaggttccaaaggtgaccctggccttcca
ggattccaaggttcccctggtatccccggtcctaaaggtcttgatggtgcacccggtggt
cccggtcttgggggaagtccaggtagaccaggagagcctggtcgaccaggatcacctgga
ttgcctggagagaagggtcaggctggtcgggacgggatcccaggaccagctggagtaaag
ggagaaccagggcttcctggttatggtggtcctggtccttccgggcttccaggtttgcca
ggtgctaaaggagacccaggtcttcctggtccatctggcagacctggtttcccaggcccc
aaaggagatgctggctttcctggttctcctggttctccaggtaaccttgggcctcctggc
cccccaggacaggcgctgcagggccctaaaggactccaaggtcccccaggaccacctgga
agagcaggctccacaggtcttccaggtgcacccggcccagaaggtccccgtggacctgca
ggaagtggcggtgttaagggggagaagggtatacctggtgctcccggccagcctggattc
cctggacagaagggagatgctggtgtcccgggattcccaggtccctctggtcttcctggt
ggccctggtataaagggagacatcggactgcccggtgttcctggattcccaggaacaaag
ggagacccagggctccctggtcgcagtggccctcctggagctcaaggagatcctggaaac
tctggtcctcctggtgagcccgcaatacctccggctccaattgtgttgaagggagagcct
gggctcccaggtcctccaggccagcctggtactcggggaccatctggtggtcctggacgt
gatggacttccaggtcagcctggtagccctggagatcctggtgctgagggtcctcctggc
ttcaacggcccacctggcaggaagggagaccctggacccgccggccagcctggttcacct
ggatattctggtcctcctggttcggatggtccacagggccctcccggtcttccaggatca
gtatctgcatcccacggtttccttatcacccgacacagccagactgaggaggtgcccggt
tgtcctgacagaactaacatcatctatgatggatactctctgctgtatgtccagggcaat
gagagggcacatggacaggaccttggctcggccggcagctgtctgcgcaggttcagcacc
atgcccttcatgttctgtaacatcaacaatgtctgcaacttcgcctcccgcaatgactac
tcctactggctgtccacacctaaatccatgcccatgtctatggaccccatcaccggtgag
ggtatcaagccttacatcagccggtgtacagtgtgtgaagctccagccatggtgattgca
gtccacagtcagaccatccagattccctcttgcccccaaaactgggacaatctctggata
ggatactcttttatgatgcacacaagtgcgggtgcagagggttccggtcaggctctggcc
tccccaggctcctgcttggaggagttccgcagtgctcccttcatagagtgccatggcagg
gggacgtgcaactactatagcaactcctacagcttctggctggccaccgttgatcgctct
gagatgttcaggaagccccagtcagagaccctaaaggctggtagcctacggacacgcgtc
agtcgctgtgtggtctgcatgaagaggacgtaa
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integrated database retrieval system
