Mugil cephalus (flathead mullet): 125008073
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Entry
125008073 CDS
T08342
Name
(RefSeq) CCR4-NOT transcription complex subunit 6
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125008073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcep03019
]
125008073
Enzymes [BR:
mcep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
125008073
Messenger RNA biogenesis [BR:
mcep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125008073
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125008073
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
125008073
NCBI-ProteinID:
XP_047441068
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All DBs
Position
5:14299803..14314895
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AA seq
559 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEAANGKKSYWAELEISGRVRSLSTALWSLTHLTALHLSD
NSLSRIPPDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQEIMSLYQEPDGTRRLLSYLLDNLAGAIKRIPTEQPPARSWISLQEP
DRARASALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEIMGCNADIISLQE
VETEQYYNFFLPELKEQGYDGFFSPKSRARTMSESDRKHVDGCAIFYKTEKFSAVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEVRKEMMEMSSGKSLHGMEKQLLLVANA
HMHWDPEYSDVKLVQTMMFLSEVKNIVDKATRSLKLSSVSGETNAIPLVLCADLNSLPDS
GVVEYLSTGGVDCTHKDFKELRYSDSLTKFNCNGKNSTSNGRITHGFKLKSAYENGLMPY
TNYTFDFKGVIDYIFYSKPHLNVLGILGPLDPHWLVENNVSGCPHPHIPSDHFSLFAQLE
LLLPNLPPQVNGLHLPARR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgacccgccggatcccaggcggatgtacacaattatgtccagc
gaggaggcagccaatgggaagaagtcatactgggctgagctggaaatcagcggccgagta
aggagtctcagcacagccctgtggtctctcacccacctcactgccctgcacctcagtgac
aactcactgtcacgcatcccgccagacattgccaaactacacaacctggtgtacctggat
ctctcatccaataagatcaggagcctgccggcagagctcggcaacatggtgtctctcagg
gaactgcttttaaataacaaccagttgcgggttctgccatttgaattggggaaactgttt
cagttacaaacactggggttgaaaggtaacccacttgcacaagaaattatgagcctctac
caggaacccgatggcacgcggagactgctcagctacttgttagacaatctggcgggggct
atcaagcgcataccaacagagcagcccccagcccggtcatggatctcacttcaggaacca
gaccgagcaagggcctccgcactgttctctgtgatgtgctacaatgtgctatgtgataag
tacgccacacgacagctatatggctattgtccctcttgggctctgaactgggagtacagg
aagaaatccatcatgcaggagatcatgggctgcaatgcagacatcatcagtttgcaggaa
gttgagacggagcagtactacaatttcttcttgcctgagctgaaagagcagggatacgac
gggttcttcagtccaaagtcacgagcgagaaccatgtccgagtcggatcgaaaacatgtg
gacggatgtgcaattttctacaagacggaaaagttcagtgctgtgcagaagcacacggtg
gagttcaaccagctggccatggctaactccgagggctcagaggccatgctgaacagggtg
atgacgaaggataacatcggggtcgctgtactgctcgaggtccgcaaagagatgatggag
atgtcctctggaaagtcactgcacggcatggagaagcagctgctcctggtagccaatgcc
cacatgcactgggacccggagtactctgacgtcaagctggtccagaccatgatgttcctg
tcagaggtgaagaacatagtggacaaagctacgcgcagtctcaagctgtcctccgtctcc
ggtgaaaccaatgccattccactggtgctgtgcgctgacctcaactctttgcctgactcc
ggcgtggtggagtacctgagtaccggcggagtagactgcacccacaaggacttcaaggag
cttcgttatagcgacagtttgaccaaattcaactgcaacggcaagaacagcacatccaac
ggaaggatcacccacggcttcaagctgaagagcgcatacgagaacggcctgatgccttac
accaactacaccttcgactttaagggtgtcatcgactacattttctactccaagcctcac
ctgaacgtgctgggtatcttgggccctctggacccccactggcttgtagagaacaatgtc
agcggctgcccacacccccacatcccctctgaccacttctccctctttgctcagctggag
ctgctcctgcccaacttgcccccccaggtcaatgggctccatctgcctgcacgcaggtag
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