Mugil cephalus (flathead mullet): 125008486 Help Entry 125008486         CDS       T08342                                  Symbol prpf19 Name (RefSeq) pre-mRNA-processing factor 19   KO K10599   pre-mRNA-processing factor 19 [EC:2.3.2.27] Organism mcep  Mugil cephalus (flathead mullet) Pathway mcep03040   Spliceosome mcep04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:mcep00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     125008486 (prpf19)   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     125008486 (prpf19)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:mcep03041]     125008486 (prpf19)    04121 Ubiquitin system [BR:mcep04121]     125008486 (prpf19)    03400 DNA repair and recombination proteins [BR:mcep03400]     125008486 (prpf19) Enzymes [BR:mcep01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      125008486 (prpf19) Spliceosome [BR:mcep03041]  Complex B   Other components    Prp19 complex     125008486 (prpf19)  Complex C    Prp19-CDC5 complex     125008486 (prpf19) Ubiquitin system [BR:mcep04121]  Ubiquitin ligases (E3)   U-box type E3    125008486 (prpf19) DNA repair and recombination proteins [BR:mcep03400]  Eukaryotic type   Other factors with a suspected DNA repair function    PSO4 complex     125008486 (prpf19) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Prp19 Beta-prop_EML_2 WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR75_1st Beta-prop_EML ANAPC4_WD40 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_WDR19_1st PEP5_VPS11_N Beta-prop_EIPR1 Beta-prop_HPS5 Beta-prop_SPT8 U-box Beta-prop_Vps41 Beta-prop_RIG_2nd PROPPIN Beta-prop_DCAF4 Beta-prop_Nup120_160 WD40_RFWD3 Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N B-prop_COPA_B_2nd Cytochrom_D1 Ge1_WD40 zf-Nse ATG16 Motif Other DBs NCBI-GeneID:  125008486 NCBI-ProteinID:  XP_047441715 LinkDB All DBs Position 5:complement(13129195..13133867) Genome browser AA seq 505 aa AA seqDB search MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGTDPMNGQPLSEEQLVDIKVSHP IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL TKEVTAAREALATLKPQAGLVAPQAAPASQPAAAGAGGEPMEISEQVGMTPEIIQKLQDK ATILTTERKKRGKTVPEELVRAEDLSKYRQVASHAGLHSASVPGILALDLCPSDTSKVLT GGADKNVVVFDKNEEQIVATLKGHTKKVTSVIYHPSQSVVFSASPDTTIRVWSVTGGNCV QVVRAHEAGVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDESAGCALTCAQFH PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSLKLW DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFTDHTGLVT GVAFGENAQFLTSAGMDRSLKFYSL NT seq 1518 nt NT seq  +upstreamnt  +downstreamnt atgtctttggtttgcgcaatctccaatgaggtgccggagcacccgtgcgtctctccggtg tccaaccaagtgtttgagcgcaggctgatcgagaagtacatcgcagagaatgggacagac ccgatgaacggacagcctctgtccgaggagcaactcgtagatatcaaagtgtcccatcct attagaccaaaggcaccatcagcaacaagcattcctgccattctcaagtccttgcaagat gagtgggatgccgtcatgcttcatagcttcaccttgcggcagcagctgcagaccactcgc caggaactttcgcacgccctctaccaacacgacgccgcctgcagagtcattgctcgactc accaaagaggtcaccgctgcccgagaagctcttgccacgcttaaaccccaagccggattg gttgccccacaggcagcccctgcctcccagccagctgcagcaggtgctggtggagagcct atggagattagtgaacaggtgggaatgaccccagagatcattcagaagctccaagacaag gctacgatcctcactacagagagaaagaagagaggaaaaactgtcccagaggagctggtt agagccgaggatctcagcaaataccgccaagtggcctctcacgccggtcttcatagtgcc agtgtgcctggtattctggctctggatctgtgtccctctgacaccagcaaagtgcttact ggtggagctgacaagaacgtggtggtgtttgataagaacgaggagcagattgtggccacg cttaaaggtcacaccaagaaagtcacctccgtcatttaccatccatctcagtctgtggtc ttctctgcatctccagacaccaccatccgtgtgtggtctgtcaccgggggcaactgtgtg caggtggtgcgtgcccacgaggcaggcgtcactggactctcccttcatgctactggggac tacctgctcagctcctctgaggatcagtactgggccttttctgacatccaaactggtaga gtcctcaccaaagttactgatgaaagcgctggatgcgctctcacttgtgctcagttccac cctgacggactcatttttggcactggtactgctgactcccaaatcaagatttgggatctg aaggagcgcactaacgtggccaacttcccaggccactctggacccgtcacctccattgct ttctctgagaacggatactatcttgccacaggtgctcaggatagctctctgaaactgtgg gatcttaggaaactgaagaacttcaagactatcactcttgacaacaactatgaggtgaag tcccttgtgtttgatcagagtggtacctacctggctgtaggagggtcagacatccgtgtc tacatctgcaagcagtggtctgaggtcctcaacttcacagatcatacaggattggtgact ggtgtggcctttggagagaacgctcagttcctgacctctgcaggaatggacagaagtctc aaattttacagcttgtag

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