Mugil cephalus (flathead mullet): 125009031
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Entry
125009031 CDS
T08342
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep03013
Nucleocytoplasmic transport
mcep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125009031
03015 mRNA surveillance pathway
125009031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcep03019
]
125009031
Enzymes [BR:
mcep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125009031
5.6.2.5 RNA 5'-3' helicase
125009031
Messenger RNA biogenesis [BR:
mcep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125009031
mRNA cycle factors
Common to processing body (P body) and stress granule
125009031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
NAT10_TcmA_helicase
ATPase
UvrD-helicase
AAA_16
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
125009031
NCBI-ProteinID:
XP_047442476
LinkDB
All DBs
Position
6:complement(24209316..24225273)
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AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEESELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDGQVNG
PDEGLHNGGLDDSVAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNAAGRPSNMYFQTHDQIGMIGAGPGQMA
AMNIPIPFNLVMPPMPPPSYLGQPNGPAAGRGAMKGKPGRGGRQRVRGSGSQGSQGNGPN
SQASQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQ
DSTYQGERAYQHGGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctggacaccgaggaa
tccgagttgctcggagcggacacccagggctccgagtacgacttcacggacttcaccctt
cccagccagacgcaaactcaaggccagacccagagccagctcgacggccaggtaaatggc
ccagatgagggtcttcacaacggtgggctggatgactccgtggccaaagccagtcagctg
ttagctgagctcaactttgaggaggatgaagaggacacgtactacaccaaagacttgccc
gtgcacgcatgcagctactgtggtatccatgatccagcgtgtgtggtgtactgtaacacc
agcaagaagtggttctgtaacggacgtggcaacacatctggcagccatattgtgaaccac
ttggtgagggccaaatgcaaagaggtgacgctgcataaggatgggccactgggagagacg
gtgctcgaatgttacaactgcggctgccgcaacgtcttcctgctgggcttcatcccagca
aaggccgactccgtggtggtgctcctctgcaggcagccgtgcgccagtcagagcagcctg
aaggacatcaactgggacagttcgcagtggcagccgctgatccaggaccgctgcttcctg
tcctggctggtgaagatcccgtcagaacaggagcaactccgagcgcgtcagatcaccgcc
cagcagatcaacaagttggaggaactctggaaggataatcccaccgccaccttggaagac
ctggagaaacctggcgtggacgaggagccgcagcacgtgttgctacgctacgaggacgct
taccagtaccaaaacatctttggccctttggttaaactagaggctgactacgacaagaag
cttaaagagtcacagacccaagacaatataacagttaggtgggacctggggctgaataaa
aagcggattgcgtatttcacactgcccaagacggattcaggtgatatgcggctcatgcaa
ggtgatgagatatgcctgcgatacaagggagacttggctccgctgtggaagggcatcggc
catgtcatcaaagtcccagacaactacggggatgaaattgccattgagctgcggagcagc
gttggagccccggtggaaatcccccacaacttccaggtggactttgtgtggaagtccact
tcttttgacaggatgcagagcgccctgaagacgttcgcagtggacgagacctccgtgtct
ggttacatttaccacaaactgctgggccacgaggtggaggatgtcaccatcaagtgccag
ctgccaaagcgcttcactgcccagggcctgccagaccttaatcactcacaggtgtatgct
gtgaagactgttctgcagaggcccctcagtctgatccagggtcctccgggcaccgggaag
actgtcacctctgccacaattgtttatcacctgtcccgacagggcaatgggccagttctg
gtgtgcgctcccagtaacattgccgtggaccagttgaccgagaagattgacaagactggg
ctgaaggttgtcaggctgtgcgccaagagcagggaggccatcgagtctccggtgtctttt
ctggctctgcacaaccagatcagcaacatggacagcatgccggagctccagaaactacag
cagctgaaggatgagaccggtgagctgtcatctgctgacgagaagcgctacagggctttg
aagcgcactgctgagagggagctgctcatgaacgctgacgtgatctgctgcacctgtgtc
ggagctggagaccctcgtctggctaagatgcagttccgttccatcctgatcgacgagagc
acccaggccactgagcccgagtgtatggtgccggtggtgttgggagccaagcagctcatt
ctggtgggcgatcactgccagctgggccccgtggtgatgtgtaagaaggcggctaaggca
ggtctgtcccagtccctgtttgaacgcctggtggttctggggatccggccgatccgcctg
caggtccagtaccgtatgcacccggctctcagtgccttcccctccaacatcttctacgag
ggctccctacagaacggcgtcactgcagctgaccgcatcaagaaaggttttgacttccag
tggccacagccagataagccaatgttcttctatgtgactcagggtcaggaggaaatagcc
agctctggaacctcgtacctcaacaggactgaggccgccaacgtggagaaaataaccacc
aggttgctgaaggccggagccaaacccgatcaaatcggcatcatcaccccatatgagggt
cagcgctcctacctggtccagtacatgcagttcagcggctccctgcacaccaaactctac
cagcaagtggaaattgccagtgtggacgccttccagggcagagagaaggacttcatcatc
ctgtcttgtgtccgtgccaatgagcaccagggcatcggcttcctgaatgacccccggcgt
ctgaatgtggcgctgacgagagccaagtatggcgtgatcatcgtggggaaccccaaggcc
ctctccaagcagccgctgtggaacaacctgctgaacaactacaaggagcagaaggtgctg
gtggagggacccctgaacaacctgagggagagcctcatgcagttcagcaagccccgcaag
ctggtcaacaccatcaaccctggaggacgattcatgagcactgccatgtacgatgcacgc
gaggccctcatccccggctctgcttacgaccgcagcaatgctgccggacgtccgtcgaac
atgtactttcaaacgcacgaccagatcgggatgattggggcgggcccgggccagatggct
gcgatgaacatccccatacccttcaacctggtgatgccgccaatgcctccgcccagctac
ctgggtcagcccaacggccctgctgcaggtcgtggagcgatgaagggtaaaccaggccgt
ggtggacgacagagggtccgtggctcgggaagccagggcagtcagggtaacggaccgaac
agccaggccagccaggacggagcgtcccagtccttctcccaggggcccctcacgcaaggc
tacatctccatgagccagccctctcagatgagccagcctggcctctcccagccggagttg
tcccaggacagctacctgggcgacgagttcaagtcccagatcgacgtggctttgtcccag
gactcgacttaccagggtgaacgtgcgtaccagcatggtggggtgaccggactgtcacag
tattaa
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integrated database retrieval system
