Mugil cephalus (flathead mullet): 125010691
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Entry
125010691 CDS
T08342
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep03008
Ribosome biogenesis in eukaryotes
mcep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
125010691 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
125010691 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcep03019
]
125010691 (xrn1)
03009 Ribosome biogenesis [BR:
mcep03009
]
125010691 (xrn1)
03016 Transfer RNA biogenesis [BR:
mcep03016
]
125010691 (xrn1)
03036 Chromosome and associated proteins [BR:
mcep03036
]
125010691 (xrn1)
Messenger RNA biogenesis [BR:
mcep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
125010691 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
125010691 (xrn1)
Ribosome biogenesis [BR:
mcep03009
]
Eukaryotic type
Pre-60S particles
RNases
125010691 (xrn1)
Transfer RNA biogenesis [BR:
mcep03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
125010691 (xrn1)
Chromosome and associated proteins [BR:
mcep03036
]
Eukaryotic type
Gene silencing
piRNA pathway
125010691 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
125010691
NCBI-ProteinID:
XP_047445399
LinkDB
All DBs
Position
7:complement(24636980..24657627)
Genome browser
AA seq
1706 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIVKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALDKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHNKLSTDKIWQNVKVYLSGHETPGEGEHK
IMEFIRSENAKPGHNPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSGLKDHMGTNYSLERVIDDWILMGFLVGNDFIPHLPN
LHINHDALPLLYRTYISVLPSIGGYLNENGHLNLRNFEKYLEKLAEFDREHFSEVFVDLK
WFESKVGNKYLNEAAGLAAEKEAASKDTNKKEDSSLCLEALSSSEDGVVGEGKGAEDEEE
EDDMFETEFRQYKRTYYMTKMGVDVVSDEFLAKQAKCYVEGIQWILHYYYHGVQSWSWYY
PYHYAPFLSDIRNISDLKLTFDLGKPFMPFQQLLAVLPAASMELLPECYRHLMTSENSPI
IEYYPPDFKTDLNGKQQEWEAVVLIPFIDERCLLAAMELNNDKLTKEEKARNRHTECAVY
TWDGEVDFTYASALPQLFPDIIHCHVRKADIPMDAWQVPLDHVSRPIDRSALYFCGFPTL
QHIKHKFYKKKSGVVVFQQSSRAENMILDIIPSEEETICDHVAAQVLGKPVFVNWPHLEE
ARVIAVSDGDTKFCLDEPPGVQRVYDRPSTPPPTRVTCLSDKEQKDWVKDVIGITEHFMK
RKGIVINETSVVLYGQLLTGRKYVPKANGVVELEKQWAKQVLPFAFQTVVKDIKAFYSSL
TSFTSLEELFPPTTTVFMVGNPYYGAMGEVQDSSDVIKDGRVRVVFNVPHEPQLDTLIQN
QHKYSVKYSPGYILASRLGITSYLVSRFSGSIFIGRGSKKNPCGEQKSNVGLNLKFSKKN
EEVPGYTKRTEKEWLYSAAVEELLSEYLDRFSEVFTTVSRNSHDDVFYEDDIWPGEDQNG
AEKVAEITSWLKSHPVSSISRSSCDLQVLDSAIVEKIEEAVEKAKVKKSTKKVRVTVKPH
LLFRPLEQQQGVVPDPDAEYRLFDRVVNTRESFTVPLGLRGTIIGIKGADREAEVLYEVL
FDEEFAGGLNIRCTSPRGYRLPPCALINMSHGSRVDHTSHKLTAIVKPQPASGANFNSHR
QMSGLNHSPRSPFVPTQHNNKHGVVKAASQGNRNSPSKGPVQKQQAMNKEEYSNVWQSLQ
NTGPPNKPPAHWHNNEGHSQQGYNQHDNKATPAGSIRLLKKNEDPNALFPSQDTPNKAMT
EFEDLIASLKISKGSQQTPPPPAPPQPPTTQSDGPLSPQSFAMKGTLVLKEMLKIDSTAT
GSPSPQEMANSSPSDGQQQNRRRSSKKLAAKMNSPHDDAAVSPSPASAANPVLTSKVSEL
ACVCAGLGMAPPDFSFIRNRQGFLVCQVKLSNGLMVHGPQCQSENEAKEKAAFFVLQRLN
SVGSGFPLPPPLYPGVGQIRPPNIGAMASVFNQQGGLLLPPQAYGPPPLWGMALPPHHQN
QPFFGAAGTFPGAARPQPATTLPIGSHNQFIPLQVTKKRVSANKKNQETREFYSAAHTVA
RNQSQRAHNQPSGQSQGQSEPQSGKTHQQHQHATKNEPSPAPSTMTAAPHTPPRQNAPAT
GHTPGSASKKKHRKLAVNFEAAKVSE
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccgaaattctaccgatggatttccgagcgctacccttgtctcagtgaagtt
gtcaaggaacaccagattccagaatttgacaatctctatctggacatgaatggcatcatc
caccagtgttcccaccccaacgacgaggatgtccactttcgcatctcagaggaaaagatt
ttcgctgacatcttccactacctggaggttctcttcaggatcgtcaagcctcgcaaggtc
ttcttcatggctgtggacggggtggcgccaagggcaaagatgaaccagcagagagggcgc
agattcaggtccgccaaagaagcagaggacaagataaaaaaagcgctggataaaggagag
gtgcttcccacagaggctcgcttcgactccaactgtatcactcctggcactgatttcatg
gcgagacttcaggaacagctcaagtattttgtccacaacaagctttccactgacaagata
tggcagaatgtcaaagtctacctttctggccatgagacaccaggggagggagaacataag
atcatggagtttattcggtctgaaaatgcaaagccgggtcacaaccccaacacccgacac
tgtctgtacggtctggacgctgacctgattatgctgggtttgaccagccatgagccaaat
ttctcccttctccgagaggaagtccgctttggagggaagaaatcccagaaaaggataaca
gctccagaggagacaacgtttcacttgcttcacttatctctgatgagagagtacatagac
tacgagttctctgggctcaaggatcacatgggcactaattatagcttggagcgagtaata
gacgattggatcctcatgggcttcctagtaggaaacgatttcatccctcacctccctaat
cttcatatcaatcacgacgctttaccgttactgtacaggacgtacatcagcgtactaccc
agcattggaggctatctgaatgagaatggccacctaaacctcagaaactttgaaaagtac
ctggaaaagcttgctgagtttgaccgggagcattttagcgaggtgtttgtggacctgaag
tggtttgagagtaaagtcgggaacaaatatctgaacgaggctgcaggactggcagcagag
aaggaagccgccagcaaagacaccaacaagaaagaagactcatccctctgtctggaagct
ctgtcctcatcagaggatggtgtggtcggagaaggaaaaggagcagaggatgaggaagag
gaggacgatatgtttgaaacggagttcagacagtacaagcgcacatactatatgaccaag
atgggcgtggatgtcgtgtccgatgagttcctagccaagcaagccaaatgttatgtggaa
ggtatccagtggattctccactactattaccatggagtccagtcctggagctggtactac
ccctaccactatgctcccttcctgtctgacatcaggaatatatctgacttaaagttgacc
tttgaccttggcaaacccttcatgcccttccagcagctgttggcagtcctgcctgcagcc
agcatggagctgctgcctgagtgctacaggcacctgatgaccagtgaaaactcgcccatt
attgagtactaccctcctgacttcaagactgacctgaatggcaagcagcaggaatgggaa
gccgtggtgctcattccattcatagatgagaggtgcttactagcagccatggagctcaac
aatgacaagctgacgaaagaggagaaggccagaaatcgtcacacagagtgtgcagtctac
acatgggacggtgaagtagacttcacatatgcctccgctctacctcagctattccctgac
atcatccactgccatgtcaggaaagccgacatcccaatggatgcttggcaagtgccatta
gaccacgtcagcaggcctattgaccgctcagcgctgtacttctgtggcttcccaaccctg
caacacatcaaacacaagttctataagaagaagagcggggtggtcgtattccagcaaagt
agcagagcagaaaacatgattctggatatcatccccagcgaagaggaaacgatatgtgat
cacgttgctgcacaagttctggggaagcctgtgtttgtcaactggccccatctagaggaa
gctcgtgttattgcagtgtcagatggagacaccaagttttgtctagatgagccgccgggt
gtccagcgagtctacgacaggccgtccactccccctcccaccagagtcacctgtctgtct
gacaaggagcagaaagactgggtgaaagacgttatcggaatcacagaacatttcatgaag
agaaaaggcatcgtgattaatgagacatcggtggttttgtacggccagctgctgacagga
aggaaatacgtccccaaagccaatggggtggtggaactggagaagcagtgggccaaacag
gtcctccccttcgccttccagactgtcgttaaggatatcaaggccttttactcctctctg
acctcctttacaagcttagaagagctctttcctccaacaacaaccgtcttcatggtggga
aacccgtactacggtgccatgggagaggtgcaagattccagtgatgtcatcaaagacggt
cgagtacgagtggtcttcaacgtgccacatgagccacagctggatactttaatccagaac
caacacaaatacagcgtgaagtacagccctggatacattctggcctctcgactgggcatc
accagctacctggtctcccgcttctctggaagcatcttcatcggcagaggctcaaagaag
aatccctgcggggagcagaaatctaacgttggcctgaatctgaagttcagcaagaagaac
gaggaggtgcctggatacaccaagagaactgaaaaagagtggctctactcagctgctgtg
gaggagctgctctctgaatacctggacaggttttcagaggtatttaccacggtgtccaga
aacagtcatgatgatgttttctatgaagatgacatctggcctggagaggaccagaacggg
gcggagaaggtggccgaaatcacctcgtggttgaaaagccacccagtcagctccatcagc
aggtcgtcgtgtgacctccaagtgctggactcggccattgtggagaagatcgaggaagca
gtggagaaggctaaggtgaagaagagcaccaagaaagtccgcgtgacagtcaagcctcat
ctcctcttcaggcccttggagcagcagcaaggcgtagttccagacccggacgcggagtat
cgcctgtttgacagagtcgtcaacaccagggagagtttcaccgttccactcggcctcaga
gggacaatcatcggcattaaaggagctgaccgtgaggcagaggttctgtacgaggtgctg
tttgatgaagaatttgctggaggcctcaacatcaggtgtacgtcacctcgtggttaccgc
cttcctccttgcgctctgattaacatgtcccacgggtcccgagtagatcacacctcccac
aaactcactgccatcgtcaaacctcagcctgcctctggcgccaacttcaactcccaccgc
cagatgtcgggcctcaaccactcgccgcgttcaccttttgtacccacacagcataacaac
aaacatggcgtggtgaaggctgcctcccagggcaacaggaactctccctctaaaggtccc
gtccagaaacaacaagccatgaataaagaggagtacagcaatgtgtggcagtctctgcag
aacacaggccctcccaacaaacctcctgctcactggcacaataacgaaggacattcccaa
caggggtacaatcaacatgacaacaaggctaccccagctgggagcatcagactgttgaag
aaaaatgaagaccccaacgcccttttcccctcacaggatacacctaacaaggcgatgact
gaatttgaggacctcatagccagtctaaagatctccaaaggtagccagcaaaccccaccc
cctcccgctcctccacaaccacctaccacccagtcggacggtcccttgtctccgcagtcc
ttcgccatgaagggaactctggtgctgaaggagatgcttaagattgacagcactgcaaca
ggaagtccatctccccaagagatggcaaacagcagcccgtctgatggccagcagcagaac
aggagacggtcgtccaagaagctagctgcaaagatgaactctcctcatgatgacgcagcc
gtatcaccctctccagcatctgctgctaaccctgtcctgaccagtaaggtgtccgagctg
gcttgtgtttgtgcaggattgggtatggcgccaccagacttcagcttcatacgcaacaga
cagggtttcctggtgtgccaggtgaagctgtccaatgggttgatggttcatggtccacag
tgccagtcagaaaacgaggccaaggagaaagcagccttctttgtcctccaaagactgaac
tcagtgggctcgggcttccctctcccacctcctctgtacccaggagtggggcagatacga
cctccgaacataggagccatggcttctgtcttcaaccagcaaggtggtttgctgctgcct
ccccaggcttacggccctcctcctctgtggggaatggcgctgcctccccaccaccagaac
cagccgttctttggagcagcagggaccttccctggagccgcccgcccccagcctgcaaca
acactgcccatcggttcacacaaccagttcatccccttacaggtgactaagaagcgagtg
tcagccaacaaaaagaaccaagaaacccgagagttttacagcgccgcccacactgtcgcc
aggaaccaatcacagagagcccataaccagccctctggccagtcgcaaggccagagtgaa
cctcagagcggtaaaacccaccagcaacaccaacacgccaccaagaacgagcccagccca
gcaccttccacgatgacagcagccccgcacacgccacctcgacaaaacgccccagcgaca
ggccacacccccggctccgcctccaagaagaagcacaggaagctggccgtcaactttgag
gcggctaaggtgtcagagtga
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integrated database retrieval system
