Mugil cephalus (flathead mullet): 125010792
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Entry
125010792 CDS
T08342
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep03013
Nucleocytoplasmic transport
mcep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125010792
03015 mRNA surveillance pathway
125010792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcep03019
]
125010792
Enzymes [BR:
mcep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125010792
5.6.2.5 RNA 5'-3' helicase
125010792
Messenger RNA biogenesis [BR:
mcep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125010792
mRNA cycle factors
Common to processing body (P body) and stress granule
125010792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
DEAD
Helicase_RecD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
125010792
NCBI-ProteinID:
XP_047445568
LinkDB
All DBs
Position
7:complement(19631167..19642585)
Genome browser
AA seq
1112 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQTQGQTQSQLDSQV
NGPDGVLQNGDDPVVKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGH
VIKVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFL
ALHNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGGRFMSTAMYDAREALIPGSVYDRSSNGRTSNMYFQTHDQIGMIGTGSGPMSSM
NLPIPFNLVMPPIPPPGYLGQANGPSAGRGGGMKGKSGSGGGGGTRGGRQRNRGMGNSGG
NGADRGGHMTGSQASQDQSSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDE
FKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcgcagactctaaccttcctggacacggaggaa
gcggagctgctgggagcggacacccagggctccgagtacgacttcaccgacttcaccctg
ccgagccagacccagacccagacccagggccagacccagagccagctagacagccaggtc
aatggtcctgacggtgtgctgcagaatggagacgaccctgtggtgaaggccagtcagctg
ctggctgagctgaactttgaggaggatgaggaggacacctactacaccaaggacctcccc
gtgcatgcctgcagttactgtgggattcacgacccagcctgcgtggtctactgcaacacc
agcaagaagtggttttgtaatggccgcggaaacacatctggcagccacatcgtaaaccac
ctggtgagggcaaagtccaaggaggtgaccctgcataaagacggtcctctgggggaaacc
gttttggagtgctacaactgtggctgtcgcaacgtcttcttgctgggattcatccccgcc
aaagcagactctgttgtggtgttactgtgcaggcagccatgtgccagccagagtagcttg
aaagacatcaactgggacagctcacagtggcagcccctcatccaggaccgctgcttcctc
tcttggctggtcaaaatcccttcagagcaggagcagctccgggcccgtcagatcaccgcg
cagcagatcaacaagctggaggagctctggaaggaaaaccccactgccaccttggaggac
ctggagaagcccggagtagacgaggagcctcagcacgtcctgcttcgctacgaggacgcc
taccagtaccagaacatcttcggtccccttgtgaagctggaagctgactatgataaaaaa
ctcaaagagtcacagacacaagacaacatcacagtcagatgggacttggggctcaacaag
aagaggattgcttattttacccttcccaagacagactctgatatgagactgatgcaggga
gatgaaatttgcctcaggtacaaaggagacctggctcctccatggaaaggcattggacac
gtcatcaaagtcccagataactatggtgatgagatcgccatagagctcaggagcagtgct
ggggctccagtggagatccctcacaactttcaggttgactttgtatggaagtccacttcc
tttgacaggatgcaaagtgccctgaagacatttgctgtggatgagacttcggtctctggt
tatatttaccacaaactgttgggacatgaggtggaggatgtagtcatcaagtgccagctc
cccaaacgcttcaccgctcaaggtttacctgacctcaaccactcccaggtgtacgctgtg
aagactgtgctgcaacggcccctcagtttgatccagggtcctcctggaacagggaagacg
gtcacctctgccaccattgtgtaccacctggctagacagggcaatgggccagtgctggtt
tgtgctcccagtaacattgctgtcgaccagctgactgagaagatccaccagacggggctc
aaggtggtgaggctgtgtgctaagagcagggaagccatagactcacctgtgtccttcctg
gctctgcacaaccagacccgtaacatggacagtatgccagagctgcagaagctccagcag
ctgaaggatgagactggagagttgtcctcttcggacgagaagcgctacagagctctgaga
cgcacggctgagagggagctgctcatgaatgctgatgtgatctgctgcacatgcgtcgga
gcaggagaccctcgtctcgccaagatgcagttcagatcaatcctgattgatgagagcact
caggccactgaacctgagtgcatggttcctgttgtcctgggggccaagcagttgattctg
gtgggggatcactgccagctgggaccagtggtgatgtgtaagaaagcggctaaagcagga
ctgtctcagtctctgtttgagcgtcttgtagttttggggatccggccgatccgtctgcag
gtccagtaccgcatgcacccggccctcagcgccttcccctccaacatcttctacgagggc
tccctgcagaacggagtcactgccgctgaccgtgtgaagaaaggctttgacttccagtgg
ccacaacctgacaagcccatgttcttttatgtcacccaaggccaagaggaaattgctagc
tctggaacatcatatctgaacaggactgaggcagccaatgtggagaaaataaccacgagg
ttgctaaaggctggagctaaacctgatcagattggcatcatcaccccttacgagggacag
aggtcctacctggtccagtacatgcagttcagcggctccctccacaccaagctctaccag
gaggtggaaatagccagcgtggatgctttccaaggcagagagaaagacttcatcatcttg
tcatgtgtgagggccaatgagcaccagggcatcggcttcctcaatgatcccagacgtctt
aacgtggcactcaccagggccaggtacggcgtgatcattgtgggaaatcccaaagccctg
tccaagcagcctctgtggaaccacctgttgaattactacaaggagcagaaggtcctggtt
gaaggtcccctgaacaacctgagggagagcctcatgcagtttagtaaacctcgcaagctg
gtcaacaccatcaatcccggcggtcgattcatgagcaccgccatgtatgatgccagggag
gccctcatccccgggtcagtttatgatcgcagcagcaacgggcgtacgtccaacatgtat
ttccagacccacgaccagatcggtatgattggcacgggctccggtcccatgtcctccatg
aacctccccatccccttcaacctcgtcatgcctcctatacctccgcccgggtacttggga
caggcgaacggcccctctgcgggtcgtggcggaggtatgaagggcaagtcgggcagcgga
ggaggcggggggaccagaggtggacgtcagaggaaccgcggcatggggaacagtggcggg
aatggagcggaccgcgggggccacatgaccggcagccaggccagccaggaccagagctct
cagccgttctcccaggggcctctgacgcagggctacatcaacatgagccagccgtctcag
atgagccagccaggcctctcccagcccgaactctcccaggacagttacctaggagacgag
ttcaagtcccagattgatgtggctttgtcccaggactccacctaccagggggagcgggcc
taccaacatggtggtgtgactggactgtcccagtactag
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integrated database retrieval system
