Mugil cephalus (flathead mullet): 125011692
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Entry
125011692 CDS
T08342
Symbol
si:dkey-61l1.4
Name
(RefSeq) fibril-forming collagen alpha chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
125011692 (si:dkey-61l1.4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mcep00536
]
125011692 (si:dkey-61l1.4)
Glycosaminoglycan binding proteins [BR:
mcep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125011692 (si:dkey-61l1.4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
125011692
NCBI-ProteinID:
XP_047446899
EnsemblRapid:
ENSMGCG00000021535
LinkDB
All DBs
Position
8:25596618..25652840
Genome browser
AA seq
1678 aa
AA seq
DB search
MFLIPKLQFLLVCMDILGHAVMPLHRDGPFQRTETVDLLQRLSHMAVNSTDASLTVDSQG
CPTLQIGLYTSLMMSAQHAFGPGFSDEFSLLVGLRSSQVEESSVLTLLNSQHHIHLQLRL
GPRSITFISTQHREYEFPVAPLFDGQWHQVSLGVSPLWLEVYVDCSLVEMVNWAYPWQGI
SIDGLLMIGGTLEGFETPFEGAVRQMTFVMGDPDAARDHCTLHRPSCNLPASDAFTHTLL
ERTHPHSTHRDSPTESHGFVLVDEPPVVLDSNNEDRIHDRGSSPGIQTLDEKNPKRYWGT
NSNEEVQSSMVVHHMESLPSVPATGSENIIYGSDRRRYRIHKGSSGPIGPPGRNGCAGRE
GYVGFKGDKGSQGIPGLDGRRGDPGPPGPPGLPTLYLWRNSKEDWTDLRKQVFYQMLRAG
WPVKPGPPGPVGEMGKPGSPGIPGDPGDRGWPGTRGEMGYPGPKGVTGNTGRLGRSGSPG
VDGHDGPPGLPGLRGPRGFKGEAASPGEKGDEGFIGEPGPSGDRGRKGGKGSKGEPGEDG
LAGLPGPLGKRGILGLHGPPGAQGNSGFDGMKGPPGMVGAPGATGGIGPPGLNGSEGDQG
PTGPRGAKGPQGLSGLAGQTGSHGPQGIQGRLGNDGHPGPKGEIGEMGPVGRRGLPGIEG
SMGMPGGPGPKGFPGGIGIQGLDGDKGEPGSKGDSGPPGATGIQGRQGERGERGTLGPPG
ERGQTGAPGKEGEEGEPGFQGVVGKQGPKGNRGSPGQKGTLGLKGSRGRTGIPGPYGPPG
MLGFRGPVGIEGPEGKPGTQSVPGSIGSPGLRGHRGLLGVAGDRGHAGSPGSPGSPGKPG
QDGIPGASGEKGFTGKPGMMGPQGPVGMYGYPGALGPTGRPGHMGQRGDAGVRGPPGISG
KTGPQGPRGPPGERGPRGVQGHQGELGPKGIQGLKGPPGPKGPMGGMGSPGPHGSQGPPG
PTGSAGPRGIPGTPGIVGLVGETGEKGLQGGMGRAGEIGAPGLEGQQGPPGPTGEGGKSG
TKGDQGAPGPKGQPGPKGLDGEPGPQGSQGLQGEPGQRGNEGEVGEPGVPGNPGIKGAKG
DMGSDGLMGSFGPRGLQGIRGQRGSKGEKGYEGLMGPEGIIGKAGPSGLLGLQGFPGIFG
VPGTDGVPGLKGDKGPPGLTGTSGKQGPKGIAGSLGTKGDMGKSGPVGNAGLTGKPGNAG
PKGFSGPEGLRGETGTKGEPGEVGPDGLPGNKGPPGLAGSQGDEGEMGLPGLVGPPGSQG
SKGSRGLEGRKGQKGEKGKHGKRGRPGKIGHTGKRGIRGKAGSRGIRGMQGEKGKVGDVG
PFGPLGRHGTYGDAGLRGQKGEVGGPGLKGEPGVTGPPGPAGKQGLKGMQGSIGKPGRAG
EKGEQGDIGPPGSRGAPGLPGLPGLFGHKGLQGFTGPPGHMGKKGLPGPPGPPGPSGASL
NLTMTQLKELMYMSDKPNYVLVQTLLGSLQNDLRWFINPPDGSKVHPATTCLELWLAHPN
STNGMYYIDPNQGSPADAFQVYCDFTTDPKTCLSPLQPQVPVKSWLKDSGANLSFQWLST
EKDGFQFEYPGGTDVVQMRFLRLNSRISTQTITYSCQPGYRQSHHKREVKFLADTRRQSY
LGELRDCVPSEDLDLDRESIFHFESEDLQLLPLRDLAVFGNEEVTQEFGFTIGPACFS
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgtttttaatccccaaacttcagtttctgttggtctgcatggacatactgggacacgct
gtgatgcctttgcacagagacggccctttccagcgcacagagacagtggatctgttgcag
cgtttgtcccacatggcggtgaacagcactgatgcatccctaacagtggacagtcaaggt
tgtccaactcttcaaataggcctttacaccagtctgatgatgagtgcgcagcatgcgttt
ggaccagggttttctgatgagttcagcttgctggtgggcctccgcagttctcaggtggag
gaaagcagtgtgttgactctgttgaactcacaacatcacatccatctgcagctccgactt
ggcccacgttcaatcaccttcatctccacccaacacagagaatatgagttccctgtggca
cctctgtttgacggtcagtggcaccaggtgtcactgggtgtgtctccgctctggttggag
gtttatgtagattgttctcttgtggagatggtgaactgggcttatccttggcagggtatc
tccatagatggcctgctcatgattggaggaaccctagagggctttgaaacaccctttgaa
ggtgctgtgagacaaatgacctttgtgatgggagatccagatgctgccagggaccactgt
actctccatcggccatcctgcaacctaccagcctccgatgcattcacgcataccctgtta
gagagaacccacccacactctacccatcgagattctcctactgaaagccatggcttcgta
cttgttgatgaacctcctgttgtgttggactctaataatgaagacagaattcatgaccgt
ggatcctctccaggaatccaaacactagatgaaaaaaacccaaagaggtactgggggaca
aacagcaatgaggaagtgcagtcttctatggttgtgcaccatatggagtcactgccttct
gtacctgccactggatcagagaacattatctatggatctgaccggagacgatacagaatt
cacaaaggctcttctgggcccattggaccacccggaagaaatggatgtgctgggagagaa
ggttatgttggatttaaaggtgataagggttctcagggaattccggggcttgatgggagg
agaggggacccagggcctccgggacctccagggcttcccactctctacctctggaggaac
tctaaggaggactggactgatttacggaaacaggtcttctatcagatgctccgagctggc
tggccggtgaagcctggcccaccaggaccagtgggtgaaatgggcaaacctggctctcca
ggtattcctggagatccaggggacaggggatggccaggaacaagaggtgaaatgggttac
cctgggccaaagggtgtcactggaaacacagggaggttgggcagaagtggcagtccagga
gtggatggacacgatgggccaccagggctacctggtctccggggccccagaggctttaaa
ggagaagcagcttcacccggggagaaaggtgatgagggtttcatcggtgaacctgggcca
agtggagacagggggagaaaagggggaaagggatctaaaggagaaccaggggaagatggc
cttgctggccttcctggtcctttaggtaaaagaggcattctgggactccatggacctcca
ggggcacagggaaactctggatttgatggcatgaaaggtcctccaggaatggtgggtgca
ccaggggccactggtggtataggaccgcctggactgaatgggtctgagggggatcaaggt
ccaactggtccaagaggtgctaagggccctcaaggattatcaggtttagcaggacagaca
ggctcacatggacctcaagggattcagggtcgactaggaaacgatggccacccaggtcca
aaaggagagataggtgaaatgggacctgtaggaagaagaggattgcctggcattgaagga
tccatggggatgcctggaggtcctggaccaaaaggatttccaggaggcataggaatccaa
ggactggatggtgacaaaggagagcctggatccaaaggagacagtggaccaccaggtgct
acagggatccagggtcgccagggagagcggggagaacggggaactttaggtcctccaggc
gagagaggtcaaacgggggctccaggaaaggagggtgaagaaggcgagcctggtttccaa
ggagtggttgggaaacaggggccaaagggcaacagaggctctccaggacaaaaggggacg
ttaggcctcaaaggatcaaggggtcggacaggaatccctggcccgtatggtccacctggc
atgctgggttttagaggcccagttgggattgagggaccagaaggaaagcctggtacacag
agtgtgcctggctctattggctctcctggccttagaggacacagaggattgctcggtgtg
gctggtgatcgtggtcatgcgggttctccaggatctccaggttctcccggaaagccaggt
caagatgggatccctggggcatccggggagaagggcttcacaggaaaaccaggaatgatg
gggccccagggcccagtgggcatgtatggttaccctggagcattgggcccaactgggagg
ccaggccacatggggcaaaggggagatgctggtgtcagaggccctcctggcatatcagga
aagactggaccacagggtccacggggacctcctggagagagagggccaaggggagtacag
ggccatcagggagagcttggtcccaaagggattcagggactgaaaggccccccaggccca
aaaggaccaatgggtggcatgggtagtcctggtccacatgggagccaggggcctccaggt
ccaacagggtcagctggacctagaggaattccaggaacaccagggattgttggactggtg
ggtgagactggagaaaaaggtctgcagggaggaatgggtcgtgctggagagattggcgct
ccaggtctggaagggcagcagggtcctccaggtcctactggtgaaggagggaaatctgga
acaaaaggtgaccagggagctccaggccccaagggacaaccagggcccaagggacttgac
ggagagccaggacctcagggctcacaaggactgcagggtgagcctgggcagaggggaaat
gagggagaggttggggaacctggtgttcctgggaatccaggtattaaaggggcaaaggga
gacatgggaagcgatggtcttatgggatcatttgggcctcgaggactccaaggcatacga
ggacagagagggtctaaaggagaaaagggttatgaaggtttaatgggtccagagggtatc
attggaaaagctggaccatctggcttattaggactgcaagggtttccaggtatttttggg
gttccaggaactgatggggtaccagggctgaagggagacaaaggtcctcctggtttgact
gggacgtcaggaaaacaaggtccaaagggaatagcaggaagcttgggcacaaaaggtgac
atgggaaagagtggaccagtggggaatgcagggcttacaggaaaaccaggaaatgctggt
ccaaaggggttttctggtcctgaggggttgagaggggagactggaacaaagggggaacca
ggagaggtgggtcctgatggtttgccaggaaataaaggtcctccaggattagcaggatct
cagggcgatgagggtgagatgggacttccaggtcttgttggccctccaggatctcaggga
tcaaagggtagtcgtgggctggagggaaggaaaggacaaaaaggtgaaaagggcaaacat
ggcaaacgtggacgtccaggaaagattggacacactggaaagagggggataagagggaaa
gctggaagcagaggcataagaggaatgcaaggagaaaaggggaaggtgggagatgttggt
ccatttggtcctctggggagacacggtacatatggtgatgcaggcctacgtgggcaaaaa
ggtgaagtgggaggacctggccttaagggggagcctggagtcacaggaccacctggtcct
gctggtaaacaagggttaaagggtatgcaaggatctattggcaagcctggaagagctggt
gaaaaaggagagcagggggatattggtccaccaggtagtcgaggagctcccggcctgcct
gggttgcctggtttgtttggacataagggactccagggctttacaggaccacctggccat
atgggaaagaaaggcttacctggtcctcctggcccacctggaccttcaggagcctcatta
aacctcacaatgactcaactgaaggagctcatgtacatgtcagacaaacccaattacgtc
ctggtccagactcttttgggctcccttcagaatgatttacgttggttcataaatccacca
gacggcagcaaagtccacccagcgacaacatgtctggagctgtggcttgctcatcccaac
tccactaatgggatgtattacattgatcctaaccagggcagcccagctgatgcctttcaa
gtatattgtgactttacaacagacccgaagacctgtctgtctccactccagcctcaggtt
ccagtaaaatcgtggttgaaggattctggcgccaatttgtcgtttcagtggttgagcaca
gagaaagatggcttccagtttgagtatccaggtggaacagatgtggtgcagatgaggttt
ctgcggctcaacagcagaatctccactcagaccatcacttactcctgccagccaggatat
agacagagccaccacaagagggaagtcaagttcctggctgacactcggagacagagttat
ctgggggagctgcgggactgtgtgccctcagaggacctggacctggatcgtgagtctatt
tttcattttgaaagtgaggatctccagctgctgcctctgagggacctggccgtgtttgga
aatgaagaagtaacccaagagttcggcttcacaatagggccagcatgcttcagctag
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integrated database retrieval system
