Mugil cephalus (flathead mullet): 125011972
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Entry
125011972 CDS
T08342
Symbol
cnot6l
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125011972 (cnot6l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcep03019
]
125011972 (cnot6l)
Enzymes [BR:
mcep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
125011972 (cnot6l)
Messenger RNA biogenesis [BR:
mcep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125011972 (cnot6l)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125011972 (cnot6l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
LRR_9
type_II_gspD_N0
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
125011972
NCBI-ProteinID:
XP_047447484
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All DBs
Position
8:2000796..2022593
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AA seq
554 aa
AA seq
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MPKEKYDPPDPRRCYTIMSAEEAANGKKSHWAELEISGRVRSLSSSLWTLTHLTALHIND
NNLTRIPPDIAKLPHLVYLNLSSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYELGRLF
QLQTLGLKGNPLSQDILNLYQEPDGTRKLLNYMLDNLAVHPEQLPQRPWITLKERDQMMP
TAVFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEITSCDADIISLQEVETEQ
YYTFFLETLKDRGYDGYFCPKSRAKLVSEQERKHVDGCAVFFKTEKFTLVQKHTVEFNQV
AMANSEGSEVMLNRVMTKDNIGVAVLLEVNKDVFSSGMKPPQERQLILVANAHMHWDPEF
SDVKLIQTMMFLSELKSIAERASGSVATGSPTSDPSSIPIVLCADLNSLPDSGVVEYLSN
GGVAENHKDFKELRYSGCLTNFSCNGKNGNSDGSITHNFQLKSAYDSNLMPYTNYTYDFK
GVIDYIFFSKTHMSVLGLMGPLDSQWLIDNNITGCPHPHIPSDHFSLLAQLELHPPLPPH
PLNPLNGLHLPVHR
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgatcctccagatccccgcagatgttacaccatcatgtcggcc
gaggaggcggccaacgggaagaagtctcactgggctgagctcgagatatctgggagggtg
aggagcctgagcagctccttgtggactctcacccacctgacggcgctgcacatcaacgac
aacaacctgacccgcatcccgccggacatcgccaagctgccccacctggtctacctgaac
ctgtcgtccaataagctgcgcagcctgcccgccgaactgggcaacatggtctctctcagg
gaattgcttttaaacaacaatcttttacgagttctgccttacgaacttgggagacttttc
cagttacaaaccttggggctaaaaggaaatcctttgtcccaggacatcctcaatctgtac
caggaacccgacggaaccagaaagcttttgaactacatgctcgacaatctagcagtgcac
ccggagcagcttccccaaagaccctggatcactctgaaagagcgagaccaaatgatgccc
acagcggtgttcacggtcatgtgctacaacgtcctgtgtgacaagtacgccacgcggcag
ctctacggctactgtccatcctgggccctgaactgggagtaccgcaagaagggcatcatg
gaggaaatcaccagctgtgacgccgacatcatcagcctgcaggaggtggagacggagcag
tactacaccttcttcctggaaacgctgaaggaccgcggctacgacggctacttctgccca
aaatctcgtgccaaactggtttccgagcaggagaggaaacacgtggacggctgtgcggtg
ttcttcaagaccgagaagtttactttggtccagaaacacactgtggagttcaatcaggtg
gccatggccaactcggagggctcggaggtcatgctgaacagagtgatgaccaaagacaac
atcggggtggccgttctcctcgaggtcaataaggacgtcttctccagtggcatgaagcca
ccacaggagaggcagctgatccttgttgctaacgcccacatgcactgggaccccgagttc
tcggacgtcaagctgatccaaaccatgatgttcctgtcggagctgaagagcatcgcagag
agggcctcgggctccgtggcgacgggctcgccgacctctgacccgtcctccatccccatc
gtcctgtgcgctgacctcaactcactgcctgactctggtgtggtggaatacctgagcaac
ggaggagtggccgagaaccacaaggacttcaaagagctgcgctacagcggatgtctgacc
aacttcagctgtaacggcaagaacggcaactcagacgggagcatcacacacaacttccag
ctgaagagcgcctacgacagcaatctgatgccttacaccaactacacgtacgacttcaag
ggcgtcatcgactacatcttcttctccaagacccacatgagcgtcctgggcctcatgggg
ccgctggacagccagtggctcatagacaacaacatcaccggctgcccccaccctcacatc
ccctcggaccacttctccctgctggcccagctggagctgcacccgcccctgcccccccac
ccgctcaaccccctcaacgggctgcacctgccggtccacaggtag
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