Mugil cephalus (flathead mullet): 125013351
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Entry
125013351 CDS
T08342
Symbol
prpf8
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125013351 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcep03041
]
125013351 (prpf8)
Spliceosome [BR:
mcep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
125013351 (prpf8)
Complex C
U5 SnRNP specific factors
125013351 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
125013351
NCBI-ProteinID:
XP_047449906
LinkDB
All DBs
Position
9:complement(14248284..14262626)
Genome browser
AA seq
2337 aa
AA seq
DB search
MAATFPFRGVPGSLPPGVPPPPAPVPDYMSEEKLQEKARKWQQLQAKRYSEKRKFGFVDA
QKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDV
PVLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPL
DYADNILDVEPLEAIQMELDPEEDSSVVEWLYEHQPLKDTAKFVNGTTYRRWQFTLPMMS
TLYRLANQLLTDLVDFNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEF
NDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLI
NPISHRHSVKSQEPLPEDDEEFELPEYVEPFLKETPLYTDHTANGIALLWAPRPFNLRSG
RTRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSF
KATKFFQSTKLDWVEVGLQVCRQGYNQLLITTLKEHSXLCXLELNYNCLLVCVLQERKKS
RFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYKL
MRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWGPGWRVWLFFMRGITPLLERWLGNLLAR
QFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESWR
CWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGR
LTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTKL
LILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEF
MDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQG
INNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVIN
YKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDTA
TESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDA
RMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILP
KCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTK
IVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYT
PKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESE
FIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRV
RTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTW
EGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLT
GIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRK
SYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIER
YARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANP
ALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNL
TTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQP
KQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFN
LYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIK
VEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQ
LTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIK
ETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTVH
LPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSF
TPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQVS
WNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYG
NT seq
7014 nt
NT seq
+upstream
nt +downstream
nt
atggcagctacctttcccttcaggggggttccggggagtctgccaccaggtgtaccccct
ccacctgcaccggtcccagactacatgtctgaggaaaaactacaagagaaagcaagaaaa
tggcagcagctgcaggcaaagcgctactcagagaagagaaagtttggctttgtggatgct
cagaaggaagacatgccgcccgagcatgtccgcaagatcatcagggaccatggagacatg
accaacaggaagtttcgccatgacaagagggtttaccttggtgccctcaagtacatgccc
catgcagtgctgaagctgctggagaacatgcctatgccttgggaacagatcagagatgtg
cccgtactctaccacatcaccggagctatttcctttgtgaatgaaatcccttgggtcata
gagccagtctacattgctcagtggggtaccatgtggatcatgatgcgtcgtgagaagcgt
gatcgtcggcatttcaagcgcatgcgcttcccaccatttgatgatgaggaaccgccacta
gactatgctgacaacatccttgatgtggaacccctggaggccatccagatggagcttgat
cctgaggaagatagttcagttgtggagtggctctatgaacatcagcccctcaaagacact
gccaagtttgtgaatggcaccacctatcgtcgctggcagttcacactgcccatgatgtcc
acactttaccgtctggccaatcagctgctgacagatttagtggatttcaactacttctac
ctgtttgacctcaaggccttcttcacttccaaggccttgaacatggcaattcctggggga
ccaaagtttgagccattggtccgagacatcaacctccaggatgaagactggaatgagttc
aatgacatcaacaaaatcatcatcagacagcccatcaggacagagtacaagattgcattc
ccctatctgtacaacaacttgccacaccatgtccacctcacctggtaccatacaccaaat
gtagtgtttatcaagacggaggatccagatcttccagcgttctactttgacccgctgatc
aaccccatttcacacagacattctgtcaagagtcaggagcctctgcctgaggatgatgag
gagtttgagcttcccgagtatgtggagcccttcctcaaagagaccccactctacacagac
cacacagccaatggcattgcgctgctctgggcaccgagacccttcaacctccgatctggc
cgtacaaggcgtgccattgatatccctctgatcaagaactggtatcgcgagcactgccct
gcaggccagccagtgaaagttcgagtgtcataccagaaactgctgaagtactatgtcctc
aacgctcttaaacacagaccacccaaagcccagaagaagaggtatctgttccgctccttt
aaggccacaaagttcttccagtccaccaagctggactgggtggaggtcggcctgcaggtt
tgcagacagggctacaaccaactgctcatcactactttgaaagaacactcttgactatgt
taactagaacttaactacaactgccttcttgtttgtgtcctccaggagagaaagaagtcc
agattcggtaatgccttccatttgtgcagagaagtgctgcgtctcagcaaactggtggtg
gacagtcacgtgcagtacagactgggaaacgttgacgctttccagttgtctgatggtctc
cagtacatcttcgctcacgtgggtcagctgactggcatgtaccgctacaagtacaagctg
atgagacaaatcaggatgtgcaaagacctgaaacatctcatctactaccggttcaacact
ggtcctgtgggcaaaggtccaggttgtgggttctggggtcctggctggagagtgtggctg
ttcttcatgaggggcatcactcccctcttggagaggtggctggggaatctgctagccagg
cagtttgaaggacgtcactcgaagggagtggccaagactgtgaccaaacagcgcgtggag
tctcactttgacttggagttgcgtgctgctgtgatgcatgacatcttggatatgatgcct
gagggtatcaaacagaacaaggccagaaccatcctgcagcacctcagtgagtcctggagg
tgctggaaagccaacatcccatggaaggtacctggcctcccgacacccattgagaacatg
atcctgcgatatgtgaaggccaaagctgactggtggaccaacacagcgcactacaaccgt
gagcgaattcgtcgtggagcgaccgtggacaagaccgtgtgcaagaagaacctgggtaga
ctgactcgtctgtacctgaaagctgagcaggagagacagcacaactacctgaaggacggc
ccctacatcacggcagaagaggccgtcgccatctacacaaccaccgtgcactggctggag
agtcggcgattctctcccatcccgttccctccactgtcctacaagcacgacaccaagctg
ctcatcctggctctggagaggctcaaagaggcatacagtgtgaagtctcgtctgaaccag
agtcagagagaagagctgggactgatagagcaggcctatgacaaccctcacgaggctctt
tccaggatcaagcgtcacctgctcacacagagagcgttcaaagaggtgggcatcgagttc
atggacttgtacagccacctggtgccggtgtacgatgtggagccccttgagaagatcact
gacgcctacctggaccagtacctgtggtacgaagcagacaagagacgcctcttcccaccc
tggatcaagcccgccgataccgaaccaccaccactgcttgtctacaagtggtgccaaggc
atcaacaacttgcaggacgtgtgggagacggcagagggagagtgtaatgtgatgctggag
tctcgctatgagaagatgtatgagaagattgatctgacgctgctcaacaggctgctgcgt
cttatcgtcgatcacaacatcgctgattacatgacggccaagaacaatgtggtcatcaac
tacaaggacatgaaccacaccaactcttacggcatcatcagggggctgcagtttgcctcg
ttcatcgtgcagtattacggcctggtgatggacctgctggtgctcggcctgcaccgcgcc
agtgagatggccggcccgcctcagatgcccaatgacttcctcagtttccaggacaccgcc
acggagagcgcccacccaatccgactgtactgccgctacatcgaccgcatccacatcttc
ttcaggttctctgctgacgaggccagggacctgattcagaggtatctgacagagcaccca
gaccccaacaatgaaaacatcgtgggttacaacaacaagaagtgctggccccgtgacgcc
cgcatgagactgatgaagcacgatgtcaaccttggacgtgcagtgttctgggacatcaag
aaccgacttccaagatctgtgaccacagtccaatgggaaaacagctttgtgtcagtctac
agcaaagacaaccccaacctgctcttcaacatgtgtggctttgagtgccgcatcctcccc
aagtgccgcaccagctatgaggagtttacccacaaggacggagtctggaacctgcagaat
gaggtaaccaaagagaggacagcgcagtgtttcctgcgtgtggatgatgaatcaatgcag
cgcttccacaacagagtgcgtcagatcctgatggcctctggatccaccacattcacaaag
atcgtgaacaaatggaacacggctctgatcggcctgatgacgtacttccgtgaggctgtg
gtcaacacacaggagctcctagatctgctggtgaagtgtgagaacaagatccagacccgt
atcaagatcggcctcaactccaaaatgcctagccgcttccctccggtggtcttctacact
cccaaagagctgggcggcctcggcatgttgtccatgggccacgtgcttatcccacagtca
gacctgcggtggtccaagcagacagatgtgggcatcacccacttcaggtctggaatgagc
catgaagaagatcagctcattcctaacttgtatcgttacattcagccgtgggagagcgag
ttcattgactctcagagggtctgggccgagtacgccctcaagagacaggaggccatcgcc
cagaacaggcgtttgactctggaggatttggaggactcctgggacagaggaatcccccgt
atcaacacacttttccagaaggacagacacactctggcttatgacaaaggctggagagtc
aggactgatttcaaacagtatcaggtgttgaagcagaatccattctggtggacccaccag
agacacgacggtaaactgtggaacctgaacaactatcgcacagacatgatccaggctctg
ggtggagtagagggcatcctggagcacacgctcttcaaaggcacttatttccccacctgg
gagggtctcttctgggaaaaggccagtggctttgaggagtccatgaaatggaagaagctg
accaatgcccagagatctggtctcaaccagatccccaaccgacgtttcacactttggtgg
tcgcccaccatcaacagagcaaacgtgtatgtgggtttccaagtacagctcgatttgact
ggaatcttcatgcacggcaagatccccacgctgaagatctccctcattcagatcttcaga
gctcacttgtggcagaagattcatgagagcatcgtcatggatctctgtcaggtgtttgat
caggagctggatgctctggagatcgagacggtgcagaaggagaccatccaccccaggaag
tcgtacaagatgaactcctcctgcgctgacatcctcctctttgcatcatacaagtggaat
gtctctcgaccatctctgctcgctgactcaaaagacgtgatggacagcaccactacacag
aagtactggattgacattcagctccgctggggcgactacgattctcacgacattgagcgc
tacgccagagccaagttccttgactacaccacggacaacatgagtatctacccctccccc
accggggtgctcattgccatcgacctggcctacaacctccacagcgcttatggcaactgg
ttccctggaagcaaacctctgatccagcaggccatggccaagatcatgaaggccaaccct
gccctgtatgtgctcagggagcgcatccgcaaaggtctgcaactttactcctctgagccc
actgagccgtacctgtcctcacagaactacggtgaactcttctccaaccagatcatctgg
tttgtggacgacacgaacgtctacagagtcaccatccacaagacctttgagggtaacttg
accacgaagcccatcaatggagccattttcatcttcaaccccaggactggccagctcttc
ctcaagatcatccacacgtccgtgtgggctggacagaaacgtctcggacagctggctaaa
tggaaaacagctgaagaagtggctgccctgattcgttcactgccggtggaagagcagccg
aagcagatcatcgtcaccaggaagggcatgttggaccctctggaggtccacttgctcgac
ttccccaacattgtgatcaagggctcagagttgcagctgcccttccaggcctgtctgaag
gtggagaagtttggagatctgatcctgaaggccacagagccacagatggtgctcttcaac
ctctatgatgactggctcaagaccatctcatcttacacagccttttccagattgatcctg
atcctcagagcgctgcacgtcaacaacgaccgtgccaaggtcatcctgaaacctgacaaa
acaaccatcacagagccccatcacatctggcccacgctcactgatgaggagtggatcaag
gtggaagtgcaactcaaggatctgattctggcagattatggcaaaaagaacaacgtgaac
gttgcttcactgactcagtctgagatccgtgacatcatcctgggtatggagatctccgct
ccatcacaacagcgtcagcaaattgccgagattgagaagcagaccaaagagcagtcgcag
ctcacagccacgcagacccgcactgtcaacaagcacggagatgaaatcatcacctccaca
acctccaactatgagacccagacattctcctccaagactgaatggagagtcagggccata
tctgctgccaacctccacctccgaacgaaccacatctacgtctcatctgatgacatcaag
gaaacaggatacacctacatcctgcccaaaaatgtcctcaagaagttcatctgcatctca
gatctgcgagcacagattgcaggctacctgtacggcaccagccctccagacaacccccag
gtgaaggagatccgttgtatcgtcatggtgcctcagtggggcacacaccagactgtccac
ctgcccaaccagctgcctggtcatgaataccttaaagaaatggagccccttggctggatc
cacacacaacctaatgagtctccacagctgtcaccacaggacgtcaccacccatgccaag
atcatggccgacaacccctcttgggacggagaaaagaccatcatcatcacttgcagcttc
accccaggctcatgcacactcaccgcctacaagctgacacccagcgggtacgaatggggt
cggcagaacacggacaagggcaacaaccctaaaggttacctaccatctcactatgagaga
gtgcagatgctgctctctgaccgcttcctgggcttcttcatggtgcctggacaagtctcc
tggaactacaacttcatgggcgtgcgccatgaccccaacatgaagtacgacctgcagctg
gccaaccccaaggagttctaccacgaagtccaccggccctcacacttcctaaactttgcc
tcgctgcaggagggcgagatctacaacgcagaccgcgaggacatgtacggctga
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integrated database retrieval system
