Mugil cephalus (flathead mullet): 125015157
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Entry
125015157 CDS
T08342
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep04510
Focal adhesion
mcep04512
ECM-receptor interaction
mcep04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125015157 (col2a1a)
04518 Integrin signaling
125015157 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125015157 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mcep00536
]
125015157 (col2a1a)
Glycosaminoglycan binding proteins [BR:
mcep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125015157 (col2a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
125015157
NCBI-ProteinID:
XP_047452802
LinkDB
All DBs
Position
1:12204351..12223879
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AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSVVRCQEEDDQEAGACIQDGQQYSDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPIIPSGECCPICPADASAPIETFGAKGQKGEPGDIADVVG
PKGPPGPMGPPGEQGTRGEAGAKGDKGNPGPRGRDGEPGTPGNPGPAGPPGPPGPPGLGG
NFAAQMAGGFDEKAGGAAMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGSPGEAGEPGPAG
PMGPRGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDG
AKGENGAAGAKGESGASGENGAPGPMGPRGLPGERGRPGASGAAGARGNDGLPGPAGPPG
PVGPAGAPGFPGSPGAKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPG
AKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPAG
PQGAPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPG
AAGPKGATGDPGRTGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPLGARG
QPGVMGFPGPKGANGEPGKPGEKGLVGRPGLRGLPGKDGETGAGGPPGPAGPAGERGEQG
QPGPSGFQGLPGPSGPPGEAGKPGDQGVPGEGGAPGAVGPRGERGFPGERGGSGPQGLQG
PRGLPGTPGTDGPKGAIGPAGAAGPQGAPGLQGMPGERGTGGIPGPKGDRGDNGQKGPEG
APGKDGGRGLTGPIGPPGPSGPNGAKGETGPSGPSGAPGVRGAPGDRGEVGPPGPAGFAG
PPGADGQPGAKGEIGEGGQKGEAGSPGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGATG
FPGAAGRVGSPGPNGNPGPSGPAGPAGKDGPKGVRGDAGPPGRQGDAGLRGPSGPPGEKG
EPGDIGEPGADGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGSPGSGGDRG
PPGPVGPPGLTGPPGETGREGTPGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAPG
PVGPLGKQGDRGEAGAQGPAGPPGSAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTG
LQGLPGPPGPAGDAGASGPAGPSGAKGPPGPAGPAGKDGSNGQLGPIGPPGPRGRSGESG
PAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADEASNSLRQHDVEVDT
TLKALNNQIENLRSPDGSQKNPARTCRDLKLSHPEWQSGDYWIDPNIGCTADAIKVFCNM
ENGETCVYPTIDKVPKKNWWTSKSKDRKHVWFGETMNGGFHFSYAEDGPVGNAATIQLNF
LRLLSTEASQNLTYHCKNSIAYMDAATDNLKKALLLQGSNEIEIRAEGNSRFIYGVLEDG
CQRHTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVEVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcaaggactgttctgctacttgtagcatcccaagttgtttta
ctatccgtggtcagatgtcaggaagaggatgaccaggaggcaggtgcctgcatccaggac
ggccagcagtatagtgataaggatgtgtggaaaccagagccgtgccgcatctgtgtgtgt
gacagcggagcggttctgtgtgatgagataatctgcgaggagatcaaagagtgtgccaac
cctatcatcccatctggagagtgctgtcccatctgccctgctgatgccagtgcgcccatt
gagacttttggtgctaagggccagaaaggagaaccaggagatattgcagatgttgtaggc
ccaaaaggaccccctggcccgatgggacccccaggtgagcaaggaacacgcggagaagcc
ggcgctaagggtgacaagggaaatcctggaccacgaggaagagatggtgagcctggcacc
cctggaaatccaggacccgctggaccacccggaccacccggaccaccagggcttggaggg
aactttgctgctcagatggctggaggttttgatgagaaggctggaggtgctgcgatgggt
gtgatgcagggaccaatgggtcctatgggtcctcgtggtccccctggacctaccggagct
cctgggccacagggtttccaaggttcccccggagaggctggagagcctggcccagctgga
ccaatgggacctcgtggaccacctggaccttctggaaaaccaggaagtgatggtgaagct
ggcaaacctggcaaagctggtgaacgtggacctgcagggcctcagggagctcgtggattc
cctggaactcctggactacctggaatcaaaggacacagaggtcatcctggtctggatgga
gctaagggagagaatggtgctgcaggagctaagggtgagagcggtgcttctggagagaac
ggtgcccctggacccatgggcccacgtggtctgcctggtgagaggggacgccctggagct
tctggagctgcaggtgcccgtggaaatgatggcttgcctggtcctgctggtccccctggt
cccgttggtcctgctggagctcccggtttcccaggatctccaggagctaagggagaagct
ggtcccacaggtgcccgtggagctgaaggagcacagggaccccgtggagaggctggtacc
ccaggatctcctggacccgctggagcatcgggcaatcctggtactgatggtatccctgga
gctaaaggatctgctggtgcttctggtattgctggtgcccccggattccctggcccccgt
ggcccacctggacctcaaggagcaactggacctctggggcccaaaggacagtctggagac
cctggtcttcctggatttaaaggagaagctggacccaagggagagcttggccctgctggt
cctcaaggtgcacctggccctgcaggagaagaaggaaagagaggtgccagaggagagcct
ggagctgctggacccctcggacctccaggagagagaggagctcctggtaaccgtggtttc
ccaggtcaggatggtcttgctggtgctaagggtgcccctggtgaccgtggtgttcctggt
gctgctgggcctaaaggtgctactggagaccccggacgcacaggagagtctggcctccct
ggagccagaggtcttactggtcgtcctggagatgctggtcctcaaggcaaagttggaccc
tctggtgcccctggtgaggacggtcgccccggcccacctggtcctctgggagcccgtgga
cagccaggagtgatgggattccctggaccaaagggagccaatggtgaacctggaaagcct
ggagagaagggtcttgtgggtcgtcctggtcttagaggtctgcctggaaaagatggagag
actggtgctggtggacctccaggccctgctggtcctgctggagagagaggagagcaagga
cagcctggaccatctggattccagggtctgcctggaccatctggtcctcctggagaggct
ggaaaacctggagaccaaggtgttcctggagagggtggagctcctggtgctgttggaccc
agaggtgaacgtggtttcccaggtgagaggggtggttctggacctcagggtcttcaggga
ccccgtggacttcctggaactcctggaactgatggacccaagggagctattggaccagct
ggtgctgctggaccccagggagccccaggcctgcagggtatgcccggagagagaggaacc
ggtggtatcccaggacccaagggagacagaggtgacaatggacagaagggacctgagggt
gctcctggaaaagatggtggtagaggtttgactggtcccattggtcctcctggcccatct
ggacccaatggtgccaagggtgagactggaccttctggcccaagtggtgctcctggtgtc
cgtggtgctcctggtgaccgtggtgaggttggtcctcctgggcctgctggcttcgctgga
cctcctggtgcagatggtcagcctggtgccaagggagaaatcggtgagggcggacagaag
ggagaagctggttctcctggacctcagggaccatccggagctcctggacccgtgggacct
actggtgtaactggacctaaaggagcacgtggtgctcagggagctcctggtgctacaggt
ttccctggagctgcaggcagagttggatcacctggacctaatggtaaccctggcccttca
ggtcctgctggccctgctggtaaagatggaccaaagggtgtccgtggtgatgctggcccc
ccaggaagacagggagacgctggcctccgtggaccttctggtcctcccggagagaaggga
gagcctggagatataggagaacctggtgctgatggaccttcaggtcctcagggtctggct
ggatcccgtggtattgttggtttgcctggtcagcgtggagagagaggtttccctggactc
cctggaccttctggagagcctggtaaacagggaagtcctggctctggtggtgaccgtgga
ccccctggacctgttggcccccctggacttacaggccctcctggagagactggtagagag
ggaacccctggatctgatggcccccctggtagagatggatccactggagtcaagggagag
cgaggtaacactggtcctgctggtgcccccggagctcccggtgcccctggtgcccctgga
cctgtcggaccccttggcaagcagggagacagaggagaggctggcgcacaaggacctgca
ggaccccctggatcagctggtgctagaggaatggctggaccacaaggaccacgtggagac
aagggagaggctggtgagaccggcgagaggggacagaagggtcaccgtggcttcactggt
ctgcaaggtcttcctggaccccctggtcccgctggagatgctggagcctctggacctgct
ggaccaagtggcgctaagggaccacctggacctgctggacccgctggcaaagatggatct
aatggacagcttggtcccattggaccccctggacctcgtggacgttctggagaatctggt
cctgctggtcctcctggaaaccccggaccccctggtcctcctggtccccctggccctggt
attgacatgtctgcctttgctggactgggtcagactgagaagtcccctgatcctctcagg
tacatgagagctgatgaggcctccaactctctgaggcagcacgacgttgaggttgatacc
acactcaaggccctcaacaaccagattgagaacctgcgcagcccagacggctcccagaag
aaccctgctcgtacctgcagagacctcaaactgagccatcctgagtggcagagcggtgac
tactggattgatcccaacatcggttgcacagccgatgccatcaaggtcttctgtaacatg
gagaatggagagacctgcgtctacccaaccatcgacaaggtaccaaagaagaactggtgg
accagcaagagcaaggaccgcaaacacgtctggttcggagagaccatgaacggtggattc
cacttcagctacgctgaggacggccctgttggcaacgctgccaccatccagctgaatttc
ctgaggcttctatccactgaagcatcccagaacctcacttaccactgcaagaacagcatt
gcctacatggacgctgccacagacaacctgaagaaggctttgctgctgcagggctccaat
gagattgagatccgtgcagagggaaacagtcgcttcatttacggtgtgttggaggatggc
tgccagagacacacaggtcggtggggcaagactgtctttgagtacaaaacacagaaaacc
tcccgtctgccaatcgtggacattgcccctatggacatcggaggagcggatcaggagttc
ggagtggaagttggagctgtctgcttcttgtaa
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