Mugil cephalus (flathead mullet): 125015711
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Entry
125015711 CDS
T08342
Symbol
smg5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125015711 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcep03019
]
125015711 (smg5)
03032 DNA replication proteins [BR:
mcep03032
]
125015711 (smg5)
Messenger RNA biogenesis [BR:
mcep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
125015711 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
125015711 (smg5)
DNA replication proteins [BR:
mcep03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
125015711 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
125015711
NCBI-ProteinID:
XP_047453578
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All DBs
Position
11:25835823..25859351
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AA seq
1128 aa
AA seq
DB search
MSGPGQDSEPEAKVLLIKRLYRAVVESVHKLDVIISSKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSATPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVMPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSDA
PFEGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSRDIKRLLVSFMYLQSLLQPKNS
LLETELTSLCQSVLEDFNLVLFYLPPPTHSVTHHCPSEEEEEQQQQHTDSSCPVLPDTLV
FKMVVTCLMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEETESQVPPLHT
DAADDLETRDVSAPPTDHSDERPLQNGSLEQEDEEDKEEDGSERVGTAKHGSVEEQRKVE
EEKQRQKKKYARLSRLRRRRCARKDTRGEDESDLSEGFESEDDEDDDEERRGRADSTGGT
TTTTAAPVNPTSVRKETKGDPLGEEGSWGSGSEEEEEEEEGGTAFDVETDSDMNSQESRS
DLEDIEDTENSDNLEGQAREHQDEEEDEEQPKEEGGERDGDTPPTTNGPLTPSDSSISSN
LQAMSSQLFQAKRCFRLAPTFSNMLLRPQPSPSSGIPTPTDTSAPPSQETPPPPGESPCD
LNPGTANGTNENDLDSDSEGSQHSTQSVHSEKTLLEKLEILTNQGLIQVVKVFVDWLRTN
TDIILMCAQSSQSLWNRLSVLLNLLPDGSKMLEAELGLNAEVTALLNECEQPGLVQSLLL
PEDLALRHLPALNVAHRRLDFTRRNTSLSSLEECVVRVCCIRSFGHFLTNLQGNVLHFNP
EAGIFTSISQSEQENLVQQAKAQFRMAEEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPK
AQSSMSPYLVPDTAALCQHLNLIRQLAGSGCFIIIIPRTVIDGLDRLKKENPGARDGIRF
LESEFRKGNRYIRCQKESGRSFERDKLKRQDIEAWHLYKMVDSCRQLTVSQSNGDEDTAG
MVTILTGHRVEELCSQSAAMKAAVQAAGSAGMELKNIVEFYRQWKEIG
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaccggggcaggacagcgagccagaggccaaagtccttctcatcaagcggctt
tacagggctgtggtggagtctgtgcacaagctggatgtcatcatcagcagcaagtcgtcc
tacagagaggtcttcaagccggagaacatcagcctgcgcaacaagctgagggagctttgt
gtgaaactgatgtttctacaccctgtcgactacggccgtaaggctgaggagctgctctgg
aggaaggtgtactatgaagtcatccaggttatcaagaccaacaagaagcacatccacagc
cgcagtgctctggagtgcgcctacagaacgcacctgatcgccggcgtgggtttctaccaa
cacctgctgctctacatccagtcccattaccagctggagctgcaggactgcatcgactgg
acccacgtcacggatccactcattggccgaaagaaaccggtgtcagccacccccaaagag
atggagtgggcccagatggcctgtcatcgctgcctggtttatctcggagatcttgcccgc
taccagaatgaacttgcaggagtggaggctgagcagctggcggagaggttttaccaccag
gcgttatctgtgatgccgcacgtgggaatgccctttaaccaactgggaacgctggcaggg
agcaagttctacaacgtcgaagcaacctactactacctacgctgcatccagtcagacgcc
cccttcgagggcgcctacgggaacctgaagcgcctgttcgacaaagctgccaagatgtac
caccaggtgaagaagcaggaaatgaagaagctgtctccgtctcgacaaagatccagagac
attaagcgcctcctggtgagcttcatgtacctccagagtttgctgcagcccaagaacagt
cttttggagacggagctgacgtctctctgccagtcggtgctggaggacttcaacctggtg
ctgttctacctgcccccgccgacccacagcgtcactcaccactgccccagcgaggaagag
gaggagcagcagcagcagcacacagacagctcctgccccgtcctccccgacaccctcgtc
ttcaagatggtggtcacgtgtctgatggtggtgcacagccttaagagaggaggatcaaag
cagtacagcgcttctatagcttttactctggccctgttctcccacctggtgaaccacgtc
aacatccggctgcaggctgagctggaggagacggagagccaggtgcctccacttcacact
gatgctgcagatgacctggagacgagggacgtgtcggctccgcccacagaccactctgac
gagaggcctctgcagaacggttccctggagcaagaggacgaggaggacaaggaggaagac
ggctcggagagggtcggcaccgcgaagcacggcagcgtggaggagcagcgcaaggtggaa
gaggagaagcagaggcagaagaagaagtacgcccgactttcccgactccggcggcgccgc
tgcgctcgcaaagacactcggggagaggatgaaagcgacctgagcgaaggcttcgagagc
gaggacgacgaagacgacgacgaagagaggaggggtcgggccgattccacaggtgggacc
acgacgacgacggcggctccggtcaatcctacgtccgtccggaaggagacgaaaggagac
ccgctgggcgaggagggaagctgggggagcggctcggaggaagaggaggaggaggaagaa
ggaggaacggcgttcgacgtagagacggactcggacatgaacagccaggagtctcgctca
gacctggaagacatagaggacacggaaaactccgataacttagagggtcaggcccgggag
catcaggacgaagaggaggatgaggagcaaccgaaggaggaagggggggagagggacggc
gacacacctcccaccaccaacgggcccctgacgcccagcgactccagcatcagcagcaac
ctccaggccatgtcgtctcagctcttccaggcgaagcgctgcttccgcctggcgccgacc
ttcagtaacatgctgctgaggccccagccctcaccgtcctcggggattcccacccctact
gacacctctgctcccccctcccaggagaccccacctcctcctggggaatcgccctgtgac
ctgaatcccggtactgccaacggaaccaatgaaaacgacctggactctgattcagaagga
agtcaacacagcactcagtccgtacacagtgaaaaaaccctgttggagaagctggagatc
ctgaccaatcagggcttaatccaggtggtgaaggtctttgttgattggctcaggacaaac
accgatatcatcctcatgtgcgcacagagttctcaaagcctgtggaaccgactgtctgtg
ctgctcaacctgctaccagacggcagcaagatgctggaggccgagctcggtctgaacgcg
gaggtgacggcgttattgaacgagtgcgagcagccggggttggtccagagtctgctgctg
cccgaggacctggccctgcgacacctgcccgctctcaacgtagctcaccgacgcctcgac
ttcacgcgccgcaacacctccctcagctcactagaggagtgtgtggtgcgagtctgctgt
atccgcagctttggccacttcctcaccaatctccaaggcaacgttctgcacttcaacccg
gaggcgggaatcttcaccagcatcagccagtctgagcaggagaatctggtgcaacaggcc
aaggcccagttcagaatggctgaagaggaggctcgtcggaatcgcttgatgagggatatg
gctcagcttcgactccagttggaggtgtcccagctggagggcagccttcagcagccgaaa
gcgcagtcgtccatgtctccctacctggtaccggacacggcggcgctctgccagcacctc
aacctcatccgacagctggctggcagcggctgcttcatcatcatcatcccacggacggtg
atcgacggactggaccggctgaagaaggaaaaccctggcgcgagggacggcatccgcttc
ctggagtccgagtttcgcaaaggcaacaggtacatacgctgccagaaagagtcgggtcga
agctttgaaagagataaactgaagcgacaggacatcgaagcttggcacttatacaagatg
gtggacagttgccgccagctgaccgtctcccagagcaacggagatgaagacacggccggc
atggtgaccattctcacgggccatcgggtggaggagctctgctctcagtctgcagccatg
aaggcggcggtccaggcggccggctctgcgggcatggagctgaagaacatcgtggagttc
taccgtcagtggaaggagatcggctga
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