Mugil cephalus (flathead mullet): 125017674
Help
Entry
125017674 CDS
T08342
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
mcep
Mugil cephalus (flathead mullet)
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mcep04147
]
125017674 (col18a1a)
00535 Proteoglycans [BR:
mcep00535
]
125017674 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
mcep00536
]
125017674 (col18a1a)
Exosome [BR:
mcep04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125017674 (col18a1a)
Proteoglycans [BR:
mcep00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
125017674 (col18a1a)
Glycosaminoglycan binding proteins [BR:
mcep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125017674 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
DUF1554
Motif
Other DBs
NCBI-GeneID:
125017674
NCBI-ProteinID:
XP_047457034
LinkDB
All DBs
Position
12:complement(26164065..26226299)
Genome browser
AA seq
1753 aa
AA seq
DB search
MVSKESNHLSFTGNTSTYVSSDTGARSESGFSPGTETSWKPGFERQQGDVISADPGALDS
GGGEVTQANQIKVNFQESAWTNGNTAEEGHNPGSTKSEHGLDSSLETPNTTKSNRNSSYS
WNDFNFTRHSHENPGDLFTSTVSDTFVHTELSQDIHEETVSQLPAAEFTAKQEHLPNPVM
QTSQASFASQTLSTTQIPGSQPQTGSERPHTFLIPTSAQSQVPSQTLGTRQGEATTITGN
IDNATQTLVSEQEPSRTTLFDHAPVGNQVTTDKHTEVVKPTEDVEFPQCLVLDTALPFCS
PVVGEKVAIPNFFNHSGVEEIREVLNEWAWLLRSHCHHSLEWFFCLLLLPKCGSPVPQPM
LPCRSFCEVLRDSCWTLLDEGHLPVECHTLPDEEEDGYQCLSVSNQKEESGVSLLQLIGD
PPPSEITQVYGPDNTPAYIFGPDANTGQLAHAHLPSPFYRNFALIFNLKPTSAKGGVIFS
VTDALQRIMYVGVKLSSVQGSNQNVILYYTEPDSQQSYEAARFLVPSMRDTWTRFSIAVM
DDRVMFYLNCDTDPQEMRIERSPDDMEFQRGAGVFVGQAGGADPEKFLGVIGDLRVVGDP
RAAERHCEEDEDDSDMASGEGSGYEGTQPSKPDVVKGNRWTTKPPSLPIPQPPVSRMDEV
NIARETASDSQHISFSVESRPGLLGSAGPSGGKGEKGDRGDRGEKGDRGPFGPKGDAGSS
SSSRGGARGEKGEPGEKGSKGSAGFGYQGKKGEPGPAGPPGPAGPPGPATEYSVGRDGSV
VSSASGPQGPPGPSGAPGPQGPPGADGEPGDPGEDGKTGPEGPRGFPGTPGDPGPKGDKG
DRGDGQPGPRGPPGPPGPPGPGFRSTFVDMEGSGFPGLDSVQGLPGPPGPPGPPGLPGLP
GSSAGTAVSSGAFGPPGKDGAPGQPGSPGPPGTDGLPGAPGPRGEKGDSGGLGLPGAVGE
KGAQGELGLPGPAGEPGLAGLPGPMGPVGPPGPPGPPGPSFNVGFDDMEGSGRGVTSGLP
GVRGPQGIQGPPGLPGLPGKPGLSGSPGLKGSAGIPGRDGLPGLDGFPGPPGQKGDSGDK
GETGEPGRDGAGLPGPPGPPGPPGQIIYQTSDNLDGVAGRVGPQGGPGLPGQAGFPGPIG
PKGDRGEPGLPGYGVKGEKGEPGLIIGPDGNLQHLEGLSGPKGDIGLPGPVGPPGPYGPP
GLKGEIGMPGRPGRPGVNGYKGEKGEPATGSGYGYPGVPGQPGPPGPPGPPGPAIPIDRF
SRYDETSRNYPATKGEKGERGDRGLPGIPGTASDFDIYTFKNGLKGEQGHPGVKGEKGDP
GGGYYDPRVGGVQGPPGPPGSPGLPGPKGDSIRGPPGPQGPPGSPGFGYDGRPGPPGPPG
PPGSPSLPGAYRPNNPISLPGPPGPPGPPGNPGHSSGVTVLRSYDMMIATARRQAEGSLI
YVIDRADLYLRVRNGLRQVMLGAYSPFFGDLENEVAEVQPPPVILYPQSQDQSHNNGAGR
YSQGGPVVRPIEPPPPRPVDPRYPPHYDPRFPDQRHTGQTDGRLATKQTEGRYPVTPQRL
PSPPVVVPASRVETSGSGLHLVALNAPQTGNMRGIRGADFLCFQQARAVGLKGTFRAFLS
SKLQDLYTIVRRSDRDSLPILNLKDQMLFSNWESVFGDSASKMRENVPIYSFDGRDILRD
SAWPEKMVWHGSSKKGHRQTDHYCETWRAGDRAVTGLASSLQSGHILQQTSSSCSGSYIV
LCIENALTSPSKK
NT seq
5262 nt
NT seq
+upstream
nt +downstream
nt
atggtttccaaagaatctaatcatttgagttttacaggaaatacatcaacatatgtatcg
tcagacactggagccaggtctgaatcaggattttcaccaggaactgaaactagctggaaa
ccaggatttgaaagacaacaaggagacgtaatatctgctgatcctggggccttagatagt
ggaggtggtgaggtaacccaagcaaatcaaataaaagtgaattttcaagagagtgcttgg
actaatggtaatacggcagaagagggccataatcctggtagcacaaaatcagagcacggt
ttagattcttctcttgaaactcccaacacaactaaaagtaacagaaacagtagctatagt
tggaatgactttaatttcacaaggcattcacatgaaaacccaggagatttattcacctca
actgtaagcgacacatttgtacacactgagttgtctcaagacatccacgaagagacagtt
tctcagttaccagctgctgaatttactgctaaacaggaacatctaccaaacccagtgatg
cagactagtcaagcttcatttgccagccagacgctttctacaacacaaataccaggtagt
caaccacaaacaggttctgagagaccacacactttcttaatacccacaagtgctcaatct
caagtgcctagtcaaacattaggaacaaggcagggtgaagcaaccacaataacaggtaat
attgacaatgctactcaaactttagtaagtgagcaagagcccagtcgaacaactttgttt
gaccacgcacctgtaggtaaccaggtgacaactgacaaacacacagaagttgttaaacca
acagaggatgttgagttcccacaatgcctggtgctagatactgctcttcctttttgctcc
cccgtggttggggaaaaggtcgccatacccaatttcttcaaccatagcggtgtggaggaa
atccgtgaagtactgaatgagtgggcgtggctgttaaggtcacactgccaccacagtttg
gagtggtttttctgccttctcttgttaccaaagtgcggctctccagtcccgcaaccaatg
ttaccctgccggagcttctgcgaagtcttgcgggacagttgctggactctactggatgag
ggacacctccctgtggagtgccacactctgccagatgaggaggaggatgggtatcagtgc
ttgtcagttagtaaccagaaagaagaaagtggagtttccctcctgcaactgattggagat
cctcctccaagtgaaatcacccaagtctatggaccagacaacaccccggcttacatcttt
ggcccggacgccaacacaggccagctggcacatgcccacctgccgagcccattctaccga
aactttgccctcattttcaacctgaaaccaacctctgccaagggcggcgtcatcttctct
gtcacagatgccttacagcggatcatgtacgtgggcgtcaaactgtcgtccgtgcagggc
agcaaccagaatgtcatcttgtactatacagagcctgactcccagcagtcctacgaggca
gccaggtttcttgtgccatcgatgagagacacctggacccgtttttccatcgcggtgatg
gacgacagggtgatgttctacctcaactgtgacacagaccctcaggagatgcgcatcgaa
aggtcgccagatgacatggagtttcagagaggtgctggggtctttgtcggccaagctgga
ggggctgatcctgaaaagttcctgggtgtgattggtgacctgagggtggtgggagacccc
cgcgctgctgagaggcactgtgaggaggatgaagatgactcagacatggcttcaggggaa
ggaagtggctacgagggaactcaaccctccaaaccagacgtggtgaaaggcaacagatgg
acgaccaaacctccatcgctgcccatcccacagcctccagtgtctaggatggatgaggtc
aacatcgccagagagacagccagtgactcccagcacatttcattttctgtggagtccaga
cccggtcttcttgggtcagcagggccgtctgggggtaaaggagagaagggcgacagaggg
gacagaggagagaaaggagacaggggtccttttgggccgaagggagatgcaggatccagc
tccagctcacggggtggagcccgtggagagaagggagaaccaggagaaaaaggatcaaaa
ggcagtgcaggatttggctatcaaggaaagaagggtgagcccggccccgccggccccccc
ggacccgccgggcctccaggtccagccactgagtactcagttggccgtgacggctcagtt
gtttcgtcagcctctggaccccaaggtccccctggaccatcgggagccccgggcccccag
ggaccaccaggagctgatggagagccgggtgatcctggtgaagatggaaaaactggtcct
gaaggacctcgaggtttccctggaacccccggggaccccggaccgaaaggagataaggga
gaccgtggagatggtcagcctggacccaggggacccccaggacctccaggacccccagga
ccaggctttagatctacctttgtggacatggagggttcaggattccctggtctggactct
gttcagggactgcctggtccaccaggtccacctgggcctcctggacttcctggtcttcca
ggttcctctgcaggtacagcggtgagttctggggcatttggaccaccaggaaaggacgga
gcccctggtcaacctggttcaccgggtccacctggtacagatggtctcccaggagctcct
ggtcccaggggagaaaagggggattctggtggcctgggtcttccaggagcagttggggag
aagggagctcaaggagaacttggtttaccaggacctgctggagagcctggactggctggt
ctgcctggacccatgggaccagttggaccccccgggccacctggtcctccaggaccaagc
ttcaatgtcggatttgacgacatggagggctctggtagaggtgtcaccagtggacttcct
ggtgtcagaggaccacaaggaatacagggccctcctggtttacctggacttccaggtaaa
cccggcttgtctgggtcaccaggtctgaagggcagtgcaggtattccaggaagagatggg
ctgccaggactggacggtttccctggacctccgggacaaaagggcgacagcggtgacaaa
ggagagacgggtgaaccgggtcgagatggagccggactcccgggtccaccaggtccaccc
ggacctccaggacagatcatctaccagacatctgacaatttagacggtgttgctggaaga
gttgggcctcagggtgggcctggtttgcctggtcaagctggatttcctggtcctattgga
cctaaaggtgacagaggagagcccggtcttccaggctacggagtgaagggtgagaaaggg
gaaccaggcttaataattggacctgatggaaatcttcaacatctggaaggactgtctggg
cccaaaggagacataggacttccaggacctgttggacctcctggcccgtacggtcctcct
ggattaaagggggaaatcggaatgccaggaagaccaggtcgccctggggttaatggatac
aagggagagaaaggagaaccagccactggctcaggctatggctacccgggagtccctggt
caaccaggaccacccggaccacctggaccccctggaccagccattcctatagaccgcttc
agccgctatgatgaaacttcaaggaattaccccgcgactaaaggagaaaagggagaacgt
ggtgaccgtggacttcctgggatcccaggaactgcctctgattttgatatttacacattc
aagaatgggctgaagggagagcagggacatccaggtgtgaagggagaaaaaggagaccct
ggtggtggatattatgacccacgtgttggtggtgtgcagggcccaccggggcctccaggc
agtccgggcctaccgggtccaaagggagactctataagggggccccctggacctcaggga
ccaccagggtcaccagggtttggttacgatggacgtccaggacctccaggccctccagga
cccccagggtccccctcactacctggagcatacaggcccaataaccccatcagtctccca
ggacctcctggcccccccggcccaccgggaaaccctggtcactcctctggggtgacagtg
ttgcggtcgtatgacatgatgattgctacagccagacgccaggcggagggcagtctcatc
tacgtcatagacagagcagacctttatttaagagtgcgaaatggactgcgtcaagtcatg
cttggagcgtacagtcccttctttggagacctggagaatgaggtggcagaagtccagccg
ccgcctgtgattctgtacccccagtcccaggaccagtcccacaacaacggagcgggccgc
tattcccagggaggtcctgttgttcgacccatcgagcctccgccaccacgccccgtagac
cccagataccctccgcactacgaccctagattcccggaccagagacacacaggtcagacc
gatggaagattagccaccaagcagactgagggcaggtaccctgtcactccacagcgacta
cccagcccacctgtggtagtaccggccagccgagtcgaaacgtcaggatcaggactacac
ctcgttgccttgaacgccccacaaactggtaacatgagaggaatccgtggggccgacttc
ctgtgcttccagcaggctcgtgctgtgggtctgaagggaacgttcagagccttcctgtcc
tccaagcttcaagacctttacaccattgtccgcaggtcggacagggacagcttgcctata
cttaacctcaaggaccaaatgttgtttagcaactgggaatctgtctttggagacagcgcc
agcaaaatgagggagaacgtaccaatctattcctttgatgggagagacatcctcagggac
agtgcatggcctgagaaaatggtctggcacggatcaagcaagaaaggccacaggcaaaca
gaccactactgtgaaacatggcgggcgggcgaccgtgctgtgactggtctggcctcatcg
ctacagagcggccacatcctgcagcaaacctccagcagctgctccggctcctacatcgtc
ctctgcattgagaacgccttaacgtcaccctccaaaaaataa
DBGET
integrated database retrieval system
