Mugil cephalus (flathead mullet): 125017976
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Entry
125017976 CDS
T08342
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
125017976 (ddx3xa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcep03019
]
125017976 (ddx3xa)
03041 Spliceosome [BR:
mcep03041
]
125017976 (ddx3xa)
03036 Chromosome and associated proteins [BR:
mcep03036
]
125017976 (ddx3xa)
Enzymes [BR:
mcep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125017976 (ddx3xa)
Messenger RNA biogenesis [BR:
mcep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125017976 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
125017976 (ddx3xa)
Spliceosome [BR:
mcep03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125017976 (ddx3xa)
Chromosome and associated proteins [BR:
mcep03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
125017976 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
125017976
NCBI-ProteinID:
XP_047457508
LinkDB
All DBs
Position
12:complement(2343268..2358297)
Genome browser
AA seq
819 aa
AA seq
DB search
MSHVVVDNPHGLDQQLAALDLNSADGQGGGTGRRYIPPHLRNKDGPKNAGNAYSAGRQCG
YSVAPVNFFSSKQCPQPWQAECQQRHRNNYTAGWDDCKIGYPRLASQELAFYHAFSGGWR
NRCASSSACTDNSVATDGNDDTASVQSWADHCDSAGWDGGRSNGFVNGYHDNRTNGGYGG
RGPPRNDRGGRGAYRGNRGGGAFNQPLQNAAFGNYDNKDGNWGGAPRDAAYNSFGGRNDR
SKSAFFNDRGAGSRGRYERGGFSGGGNSRWVEESRDEDWSKPTAPNERLENELFSGSNTG
INFEKYDDIPVEATGNNCPPHIESFHDVDMGEIVMGNIGLSRYTRPTPVQKHAIPIIKSK
RDLMACAQTGSGKTAAFLLPVLSQIYTDGPGDALQAIKNSGQENGRYGRRKQYPISLVLA
PTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRELERGCHLLVATPGRLVDMMER
GKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQILA
RDFLEDYIFLAVGRVGSTSENITQKVVWVEETDKRSFLLDLLNATVIPSEVQENVTEAPE
KPGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGRCPILV
ATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNSNITKDL
LDILVEAKQEVPSWLESLAYEHQHKSSTRGRSKRFSGGFGARDYRQTPGSGGFSSNRGGR
NTGGHGGNRGFGGGFGGNFYGNDGYGGNYSSGSVDWWGN
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgttgataatccacacggtctagatcagcagcttgctgccctagac
ttgaactctgctgacggacaaggcggaggaactggcagacgttacattccacctcacctg
aggaacaaagatggtcccaaaaacgcaggaaatgcttattccgctggtagacagtgcggt
tattcagtggcaccagtaaatttcttttcttctaagcagtgcccacaaccttggcaggca
gagtgtcagcaaaggcacagaaataactatacagcaggatgggatgactgtaagattggt
tacccaagactggcctctcaagagcttgccttttaccatgccttcagtgggggttggcga
aaccgatgtgcctcatcctcagcctgcactgataacagtgtggccaccgatgggaatgat
gacacagccagtgtccagagctgggcagaccattgtgattcagctggatgggatggcggc
cgcagcaatggatttgtgaatggttaccatgacaaccgcacaaacgggggctacggaggg
cggggaccccctcgcaatgatagaggtgggcgtggcgcctaccgtggtaacaggggtgga
ggcgcgtttaatcagccattgcaaaacgcagcgtttggcaattatgataacaaagatggc
aactggggaggagctcccagggatgctgcctacaacagctttggaggacgcaatgatagg
tccaagtctgccttcttcaatgaccgcggagcaggctccagaggaagatacgagcgtggg
ggcttttctggtggaggaaacagccgctgggtggaggagtccagggacgaggactggtcc
aaacccactgctcccaatgagcgcctggaaaatgagcttttctctgggagcaacactggc
ataaactttgagaaatacgatgatattcctgtggaggctactggaaacaactgtccaccc
cacattgaaagcttccatgatgtggacatgggtgagattgtcatggggaacatcggtctg
agtcggtacactcggcccaccccggtccagaagcatgctatccccatcatcaagtccaag
agagacctgatggcctgtgcccagactggctctggtaaaaccgccgccttcttgctgcca
gtgctgagtcagatctacacagacgggcctggggatgctctgcaggccatcaagaacagt
ggacaggagaatggaaggtatggccgtcgtaagcagtacccaatctcccttgtcctcgct
cccaccagagagctagccttgcaaatctatgatgaggcgagaaagtttgcctatcgctca
cgcgtgcgtccctgtgtcgtgtacggaggtgccgatattggccaacagatcagagagttg
gagagaggctgtcacctgctggtggccacacctgggcgcctggttgatatgatggagagg
ggcaagattggcctggactattgcaactacttggtcctggatgaggccgatcgcatgttg
gacatgggttttgagcctcagatcagacgcattgtggagcaagataccatgccccccaaa
ggcatcagacagactatgatgttcagcgccacattccccaaagagatccagatcctggct
cgtgacttcctggaggactacattttcctggcagtggggcgtgtcggctccacttcagaa
aacatcacccagaaggtggtctgggtggaggagacggacaagaggtccttcctccttgac
ctgctgaatgccacagttattcccagtgaggttcaggaaaatgtgacagaggccccagag
aaaccaggtaaagactccctgactctggtgtttgtggaaaccaagaagggagcagatgct
ctggaagatttcctgtaccacgagggttatgcctgcaccagcatccatggagaccgatcc
cagagagacagagaggaggctctgcatcagttccggtctggacgctgccccatcttggtg
gctacagctgtggctgctagaggtctggacatcagcaatgtgaagcacgtcattaacttt
gatttgcccagtgacattgaggaatacgttcaccgtattggccgtacgggacgtgtgggc
aaccttggtctggccacgtcgttctttaacgacaaaaacagcaacataaccaaagatttg
ctggacattctggttgaggccaagcaggaggttccctcctggcttgaaagcctggcctac
gagcaccagcacaagagcagcacccgtggacgatctaagaggttctctggtggtttcgga
gctagagactaccgtcagacacctggctctggaggcttcagtagcaacagaggagggcga
aacactggaggtcatggcggaaaccgtggctttggaggcggctttggaggcaacttctat
ggcaatgacggctacggaggaaactacagtagcggaagtgtggattggtgggggaactag
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