Mugil cephalus (flathead mullet): 125017982
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Entry
125017982 CDS
T08342
Symbol
prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125017982 (prpf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcep03041
]
125017982 (prpf6)
Spliceosome [BR:
mcep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
125017982 (prpf6)
Complex C
U5 SnRNP specific factors
125017982 (prpf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
Suf
HAT_PRP39_C
TPR_16
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
TPR_2
TPR_17
TPR_8
TPR_1
TPR_CcmH_CycH
ARM_TT21_C
TPR_9
T7SS_EccA1_N
ARM_TT21_5th
NatA_aux_su
Motif
Other DBs
NCBI-GeneID:
125017982
NCBI-ProteinID:
XP_047457533
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All DBs
Position
1:13406468..13419038
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AA seq
969 aa
AA seq
DB search
MASGAAKQPTKIVAKANAGGAGAAGAGGGPPVMPLASPLMGKKKKPFLGMPAPLGYVPGL
GRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQDDDDEDLNDTNYDEFNG
YAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRELREKEEIEKYRMERPKIQQQFS
DLKRKLAEVSEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFSKHLQTGENHTSVDPL
QGLGGLNTPYPGSMTPGLMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKG
YLTDLNSMIPTHGGDISDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLI
MKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDVRAKKRV
LRKALENVSKSVRLWKTAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENARRV
LNKARENIPTDRHIWITAAKLEEANGNTQMVDKIIDRAITSLRANGVEINREQWIQDAEE
CDKAGSVATCQAVIRAVIGIGIEEEDRKHTWMEDSESCVAHGALECARAIYAHALQVFPS
KKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAEDVPAARSILA
LAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIE
AAQELCTEALKHYEDFPKLWMMRGQIEEQCENMDKAREAYNQGLKKCPRSVALWLLLSRL
EERVGQLTRARAILEKARLKNPQSPELWLESVRLEFRAGMKNISNTLMAKALQECPNSGI
LWAEAVFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFLRTVKIEP
DLGDAWALFYKFELQHGTEEQQEEVRKRCENAEPRHGELWCAESKHVLNWQKKTGEILAQ
VASKIKNTF
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atggccagcggtgcagctaaacaaccgactaaaattgtcgccaaagctaatgcgggcggc
gctggggcggcgggggccggcggtgggcccccggtgatgcccctcgcgtctccccttatg
gggaaaaagaagaagccgtttctggggatgcccgcgccgctcggctacgtccccgggctc
ggccgaggtgctactggtttcaccacccgatctgatattggtcctgcccgtgatgccaat
gatccagtggatgatcgacatgcgccgccggggaagaggaccgtcggggaccaaatgaaa
aagaaccaggacgacgacgatgaagatctgaatgacaccaactatgatgagtttaatgga
tacgcggggagcttgttctccagtggaccctatgagaaagatgacgaagaagccgatgct
atatacgcagcactggacaagaggatggatgaaaggcgcaaagaaagaagggagctgaga
gaaaaggaagaaattgagaaataccgtatggagcgaccaaaaatccagcagcagttctca
gatctgaagaggaaactggctgaggtgtctgaggaggagtggcttagcatccctgaagtt
ggcgatgccaggaacaagcgccagaggaatccccgttacgagaagctcacccctgtcccc
gacagcttcttctccaaacacctccaaaccggagagaatcacacctctgtggatccttta
caagggctgggaggtctgaacacaccttacccaggaagcatgaccccaggtctcatgaca
ccaggaacgggggaactggatatgaggaaaatcggtcaggccaggaacacactcatggat
atgaggttaagtcaggtgtctgactcagtcagtgggcagactgtagtggatccaaaggga
tacctgacagatctcaactccatgatccccactcatggaggagacatcagtgacatcaag
aaagctcgcctgctgctgaaatcagtgagggagaccaatccccatcatccgccggcctgg
attgcctcagccaggctggaggaagtgactggcaaactgcaggtggccaggaacctgatc
atgaaaggcacagagatgtgtcccaagagtgaggatgtgtggttggaggcagccaggctc
caacctggcgacacagctaaagccgtggtagcccaggccgttcgtcacctgccgcagtct
gtccgcatctacatccgagctgcagagctggagacggacgtcagggcgaagaaacgagtc
ctcaggaaggctctggagaacgtgtccaagtcagttcgactgtggaagacagctgtcgaa
ctggaggaaccagaagatgcaaggatcatgcttagcagagctgtggagtgttgcccgact
agtgttgagctgtggttggcactggccaggttggagacgtacgagaacgcccgtcgcgtc
ttgaacaaagctcgagagaacatccccaccgatcgccacatctggatcactgctgctaag
ctagaggaagccaatggcaacacacagatggtggacaagatcattgacagagccatcact
tcgctccgtgcaaacggagtggagatcaacagagagcagtggatacaggatgcagaggag
tgtgacaaagcaggcagtgtggccacctgccaggccgtgataagggctgtcatagggata
ggcattgaggaggaagaccgcaaacacacctggatggaggactcagagagctgtgtggct
catggagcgctcgagtgtgccagggccatctatgcccatgccctgcaggtgttccccagt
aaaaaaagtgtctggcttagggctgcctactttgagaagaaccatggcaccagagagtct
ttggaagccctgctccagagagctgtagctcactgccccaaagcagaagtactgtggcta
atgggtgccaagtctaaatggctggctgaagatgtgccagcagccagaagtatcctcgct
ctggccttccaggctaaccctaacagcgaagagatctggcttgctgctgtcaaactggag
tctgagaataatgagtatgaaagagcccgccgactgttagccaaggcccggagcagtgca
ccaacagccagggtatttatgaaatccgtgaagctggagtgggtgttggggaacatagaa
gcagctcaggagttgtgcacggaggccctgaaacactacgaagacttccccaagctctgg
atgatgagaggccagattgaggagcagtgtgaaaacatggataaggccagagaggcctat
aaccaagggctgaaaaagtgtccccgctcggtggcactgtggttgctgctgtctcgtctt
gaggagagagtgggacagctgactagagccagagcaatccttgagaaggcacgtctcaag
aacccacagagccctgagctatggttggagtcagtcagattggagttccgggcgggaatg
aagaacatctctaacacgctgatggccaaagcactgcaggagtgcccaaattcaggtatc
ctttgggctgaggcagtgtttttggaggccaggccccagaggaagaccaagagtgtggac
gctttgaagaagtgcgaacatgatccccacgtcttgctcgctgtggccaagttgttctgg
agtgaacgtaagatcaccaaagccagggagtggttcctcaggacggtaaagattgagcca
gacctgggagatgcctgggctctcttctacaaatttgaactgcagcatggcacagaggaa
caacaggaagaggtgcgaaagcgctgtgagaacgcggagccccgccacggagagctgtgg
tgtgccgagtctaaacacgtcttgaattggcagaagaagacaggagagattttagcgcag
gtagccagcaagatcaaaaacacattctga
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