Mugil cephalus (flathead mullet): 125018672
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Entry
125018672 CDS
T08342
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
125018672 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcep03400
]
125018672 (msh6)
DNA repair and recombination proteins [BR:
mcep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
125018672 (msh6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
125018672
NCBI-ProteinID:
XP_047458693
LinkDB
All DBs
Position
13:10416236..10423809
Genome browser
AA seq
1387 aa
AA seq
DB search
MAKQSSLFNFFTKSPPPVCKAKPKTSPSPTEADLPSSVKKSNSSPKEQAKQATQEQKEKQ
PAAKTSSKVKQKSNAKTASGGLKKLFGDKAPAAKESSSTCSFNAGALVWAKLEGHPWWPC
MVVPQPLTGQQMRGRGRDQRVHVHFFDEPPTRGWVSSKYIREYRGSDSSDAKTGGVYFSG
KPVIRRAMEMADGVMFDTPEKRLKMPLCMDPSDEEEDDEEDMELDNSTLTDEEDSDVDDE
EKDDEPAKVSRRSSRSSTEKGNTAKRRRIIVASDSEGSDDEFKPEHAASSSEEEEEEEAA
VSSEEESTQESEPESPVKPVKRKRPAEKSTNTKAKAPAALFAAPKRAPAAAVTADTKSRL
SAFSAPDSFESQTSGPGSTGGATIWDHEKLEWLQDGRRKDRQRRRQSEDDYDPSTLYVPE
DFLNRATPGMRRWWQLKSEMFDTVIFYKVGKFYELYHMDAVTGVNELGLTFMKGTWAHSG
FPEIGFGRFSDVLVQKGYKVARVEQTETPEMMEARCKTMAKPTKFDRVVRREVCRIITRG
TQTYSVLDGAPSESQSKFLLSLKEKAEEESSGRYRTYGVCFVDTSVGYFHVGQFPDDRHC
SRLRTLIAHFSPAEVLFEKGNPSVETRKILKASLSSALQEGLNQGTQFWDAQKTLKTLSE
EDYFKDAAEKENSTGSSFLPALLKKMTSESDSLCLTPKDGYELALSALGGCIFYLKKCLV
DQELLSLANFEEYIPVDVEMEQAAGPASFFAQTRQRMVLDGVTLANLEIFQNGTGGAEGT
LLERLDTCSTPFGKRLLKQWLCAPLCNPTSIKDRLDAVEDLMGAQAQATEATDLLKKLPD
LERLLSKIHSIGTPLKGQDHPDGRAVLYEEVTYSKRKIADFLSALEGFKTMREIISAFAP
LSGEIRSALLRQVVSLKSEKNGLFPDLSAELQRWDTAFDHQKARTTGVISPKAGFDPEYD
QALADIKNCERELQDYLDRQKKRLGCKSMAFWGTGRNRYQMEVPDSISERNIPEEYEVKS
TKKGWKRYVTKETERLFSELQGFEEKRDAALKDCMRRLFYNFDKNYKEWKTGVECMAVLD
VLLAMSRYSQGGDGPMTRPQVVLPEDDNQVVPYVDLIGSRHPCVTKTFFGDDFIPNDVFI
GCPGSSESEVEGCASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRFTPVDRV
FTRLGASDRIMAGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVVK
ELAEKICCRTLFSTHYHSLVEDYASNPAVRLGHMACMVENECEDPSQETITFLYKFITGA
CPKSYGFNAARLASLPEEVIQSGHKKAREFEKSTISLRLFKKFCQLADDATLDNAHFASL
VQLIHTL
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctcacttttcaactttttcaccaagtctccgccgccggtctgcaag
gccaagccgaagacgagcccctctccgaccgaggcagacctgccgtcctcggtgaagaag
tccaactcctctcctaaagagcaagctaaacaggccacgcaggagcagaaggagaagcag
ccagcagcaaagaccagcagcaaagtgaaacagaaaagtaacgccaaaactgccagcggg
ggattaaagaaactattcggcgacaaggccccggcggctaaagaaagcagctccacatgc
tcattcaatgctggtgcccttgtgtgggccaagctagagggacacccctggtggccgtgc
atggtggtgccccagcctctgacgggacagcagatgaggggccgcggtcgggaccaacgc
gtacatgttcacttctttgatgaacctcctactagaggatgggtcagcagtaaatatatc
agagagtaccgaggctctgacagcagtgatgctaaaactggaggggtgtacttcagtggt
aaacctgtgatccgacgtgcaatggagatggctgatggagttatgtttgacaccccggag
aaaagattaaagatgcctctctgcatggatccatcagacgaggaagaggatgatgaggaa
gacatggagctcgacaactcaactttgaccgatgaagaggacagcgacgtggatgatgag
gaaaaagatgatgaaccagccaaagtcagtcgtcgttcatctcgttcttccacggaaaag
ggaaacacagccaagcgccgtcgcatcattgtagcctcagacagcgaagggtcagatgat
gagttcaaacctgaacatgctgcgtcgagcagcgaggaggaggaagaagaggaggcggcg
gtgagcagtgaagaggagagcacgcaggagtcggaaccagaaagccccgtcaagcctgtg
aagcgtaaacgccctgcggagaagtccaccaacacaaaagcaaaggcgcccgctgccctg
ttcgctgcacccaaacgagctccggcagcagcagtcacagctgacaccaagtctcgttta
tcagccttctctgctcctgacagctttgagagtcagacaagtggaccaggatccactggc
ggagcaacgatttgggatcacgagaagctggagtggttgcaggacggcaggaggaaagac
agacagaggcgacgtcagtctgaggacgactacgatccttccactctgtatgtgccagaa
gactttctgaacagagccactcctggtatgcgtaggtggtggcagctcaaatctgagatg
tttgacacagtgattttctacaaggtggggaagttttatgagctctaccacatggatgcc
gtgactggagtcaatgagctggggctcacgttcatgaaggggacctgggcgcactcgggt
tttccagagatcggctttgggcgtttctcagatgtacttgtccagaaaggctacaaggtg
gctcgcgtggagcagacggagacgccagagatgatggaagctcgctgcaagaccatggct
aagccaacaaaatttgaccgtgtggtgaggagggaagtgtgccggattatcacgcgtggt
acccagacatacagtgtgttggacggtgctccctcagagagtcaaagcaagttccttctg
agtttgaaggagaaggcagaagaggaaagctctggtcgttaccgcacctacggagtctgc
tttgtagacacctccgtgggttatttccacgtcggtcagttcccagacgaccgtcactgc
tcccgcctgcgcaccctgatcgctcacttttcccctgctgaagtgctgtttgaaaagggg
aacccatctgttgaaacccgcaaaatactgaaggcctctctgtcctccgctctgcaggaa
ggtctgaatcaggggacacaattctgggatgctcagaagactctgaaaaccttgtctgaa
gaagattattttaaagacgctgctgagaaggagaacagcactgggagcagtttcctccct
gctctcttgaagaagatgacctccgagagtgattcactgtgtcttactcccaaggatggc
tatgaactagcactgtcagctttgggtggatgtatattctatctcaagaaatgcctggta
gaccaagagttgctctcattggccaactttgaagaatacatcccagttgatgtggagatg
gagcaagcagctggacctgcgagtttctttgctcagactcgtcagcgtatggtccttgat
ggagtgactctggcaaacttggaaatcttccagaacgggacaggaggagcagaagggaca
ctgttggagcgtttggacacctgctctaccccatttggcaaacggctgctgaagcagtgg
ctctgcgcgcccctgtgtaaccccacatcgatcaaggatagactggacgccgtggaggac
ctgatgggagctcaggcccaggctacagaggctacagacctgctgaagaagctcccagat
ctggagcgtctcctgagcaagatccacagcattggcacccctctgaaggggcaggaccac
cctgacggcagggcggttctctatgaggaggtcacttacagcaagcgcaagatagcagac
ttcctctctgctctggaaggtttcaaaactatgcgggagatcatttctgccttcgctcca
ctttcaggcgaaattcgttccgcgttgctccgtcaagtcgtcagtctgaagagtgaaaaa
aatggcctctttcccgacctctctgccgagcttcaacgctgggacacggcttttgaccac
cagaaagcccgcaccactggcgtcataagcccgaaagccggctttgacccggagtacgac
caggccctggccgatatcaagaactgcgaacgagagctgcaggactacctggacaggcag
aagaaaagactcggctgtaaaagcatggccttctggggaactgggcgaaaccgttatcag
atggaggttcccgacagcatctcagagaggaatatcccagaggagtatgaagtgaagtcc
acaaagaaaggctggaagcgttacgtgacaaaggagactgaacgtctgttctcagagctg
caaggattcgaggagaagagagacgctgctctgaaagactgcatgaggagactcttctac
aactttgacaaaaactacaaagagtggaagactggagtggagtgcatggcagtgcttgat
gtgctgctggccatgtcacgctacagccagggtggagacggaccaatgaccagaccacag
gtggtgctccctgaggatgacaaccaggtggtgccctacgttgacctcattggatcccgc
cacccttgtgtcaccaagacctttttcggggacgacttcatccctaatgacgtcttcatc
ggctgccccggcagcagcgaaagcgaggtggaaggttgcgcctcgtgcgtcctcgtcacg
gggccgaacatgggcggaaagtctaccctcatgagacagtgtggacttgtgatcatcctg
gcccagctcggttgctacgttccggctgaaagcctccgcttcacgccagttgacagggtc
ttcactcggctgggagcctcggaccgcatcatggccggagagagcaccttcttcgtggag
ctgagcgagactgccagcatcctgcaccacgccactaaacactcgctcgtgctcctggat
gaactgggaaggggcacggctacatatgacggcacagcgatcgccagcgctgttgtgaag
gagcttgctgagaagatctgctgtcgcacgcttttctccacacattatcactccctggtg
gaggactacgccagcaaccccgctgtgcgcctgggccacatggcgtgcatggtggagaat
gaatgtgaggatccaagtcaggagaccatcacattcctctacaagttcatcaccggggct
tgtcccaagagttacggcttcaacgccgctcgactcgccagcctgccggaggaagtgatc
cagtcgggacacaagaaggccagagagtttgagaaaagcaccatcagcctcagattgttc
aagaagttctgccaacttgctgatgatgctacactggacaacgcgcactttgcttcactt
gtccaactcatccacaccctgtag
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