Mugil cephalus (flathead mullet): 125020859
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Entry
125020859 CDS
T08342
Symbol
scaf4a
Name
(RefSeq) SR-related and CTD-associated factor 4
KO
K13167
SR-related and CTD-associated factor 4
Organism
mcep
Mugil cephalus (flathead mullet)
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcep03021
]
125020859 (scaf4a)
03041 Spliceosome [BR:
mcep03041
]
125020859 (scaf4a)
Transcription machinery [BR:
mcep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125020859 (scaf4a)
Spliceosome [BR:
mcep03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
125020859 (scaf4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
125020859
NCBI-ProteinID:
XP_047462396
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All DBs
Position
15:11026118..11037755
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AA seq
1150 aa
AA seq
DB search
MDAVNAFNQELFSLMDSKPPISRAKMISITKSAIKAMKLYKHVVQIVEKFIKKCKPEYKV
AGLYVVDSIVRQSRHQFGADKDVFGPRFTKNITGTFENLCLCPVEDRSKIVRVLNLWQKN
GVFKIEVIQPLLDMAAGSGSGAAPYAGADEPGSSPPPAKEPVTVATANSTMTSATLHNSD
AFAAVAQLFQGQQLQQMLQNFQQQPVQPEANTQPSLHNVQTHVQNVPTGLGMVASQPLLP
SQPTQQTPQQKAAFDKKLLDRFDYDDEPEIGEETKKDEVSSQPSFIQQPPAFPQHMEHFK
LQMANMSQDHSQQLPVPPNGQLQTCGLLPGQSFPVTMPPMGHPLPGQPLPGSTGLQGFQG
MYPPHSAAQQQQDISMDMDHSSMRDGRHGQRSHSGSRSPKRRRSRSNSRTRRSRHRRSRS
RSRDRRHHSPRSRSQERRDREKERERRQKGLPPPKNETLSICSTTLWVGQLDKRTQQQDV
ACILEEFGQIESINMIPPRGCAYIVMIHRQDAFRALQKLSRGPYKVNQKTIKIAWALNKG
IKSEFKQYWDVELGVTYIPWSKMREDQLEELKEGGILDVDTLSPEWSVARSKLEQSEELT
HNGRSDQQQLEEAKVLPVVSSAAPPPQVPPMQQPMVGVGSLQPPVFPGPIGMPPPSFPPG
VPPPPFIRPGFNPMQMPPGFPPPGAMPLGPPPAAKGGVEDPPLDPAGLGNNRDDDGPNMF
NNQMGPMGNQVGGPPGLPPGGPLSGLPGGPLGGPPGSLPVGPLGGPPGGLPGGPPGALPG
GHPGNIQPGSGGLLGARPGIIPLQRPPAPPPAHMQRFPPPHGPRPPHPNLPPMPPQMIPR
GPHPQMVPHEPPLSKGAFGMPPPHNVRPPFPHGHGPPPPQGPPPPFIRPGVPRGLERPEE
MDSRPFRGDRPGFRDREPERDRDWDRDRDRERDRGFGSGRRAFGDGGRGGGGGGDKMDGR
ERLGGWQEDGGNHRGGGWDRDRDRDRDRDRDRDRDRDRRDWRERRSSLDRDRDRGRGDDG
ERERGRGEGGERGRGEGGSRESGRGAEGKGDRPRRSERRERTTRWDKDDRLAELENMDRF
RTSNSLEQPPGTAVAAETSKEPAVESSHKDAESELEAPPPEETPTGDPEPAEPLPSAQSE
QTETEQKAES
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgcctttaaccaggagttgttctcgttgatggactccaagccccca
atatctcgggcgaagatgatctccatcaccaaatcagccatcaaagccatgaaactctac
aaacacgtggtccagattgtggaaaagttcatcaaaaagtgtaagcctgagtataaggta
gcgggcttgtacgtggtggattccatcgtgaggcagtccagacaccagtttggagcggac
aaggacgtgtttggtccgaggttcaccaaaaacattacaggcacctttgagaacctctgc
ctttgccccgtagaggacaggagtaagatcgtgcgggtgttgaacctgtggcagaaaaat
ggggtgttcaagatcgaggttattcagcccctcttggacatggcggccggctctggtagc
ggtgctgccccgtacgcaggcgctgacgagccaggttcatctccacctccagccaaagag
ccagttactgtggcaacggcaaactccaccatgacatctgctactctgcacaactctgac
gccttcgctgctgtggcccagctcttccagggtcagcagcttcagcagatgctgcagaac
tttcagcaacagccggtgcagccggaggctaacactcagccttctctacacaacgttcaa
acacacgtccaaaatgtccccacgggcctgggcatggtcgcctcgcaacctctgctcccc
tcccagcctacacagcaaactccccaacaaaaagcagcttttgacaagaaactgctggac
cgctttgactatgacgacgaaccggaaatcggagaagaaacgaagaaggatgaagtctcg
tcacagccctcctttatacagcagcctccagccttcccacagcacatggagcactttaaa
ctgcagatggctaacatgtcacaagaccactcacaacagcttcccgtccctcccaatggt
cagctccagacctgtggtttattgccagggcaaagcttcccagtaactatgcctcctatg
gggcatcctctaccaggacagcccctccctggttccactgggcttcagggcttccaaggg
atgtaccctccccacagtgcagcccagcaacaacaggatatctcaatggatatggaccat
tcatccatgagggacggcagacatggccaaaggtcacactcaggctcgagatcaccaaag
cggaggaggtcgcggtctaattcccgcacgcggcggtccaggcacaggcggtcccgctcg
cgctcccgagaccggcgccaccattcgccccgttcccgctcgcaggagcgcagagacaga
gagaaggagagggagcggcggcagaaaggccttccaccgcctaagaacgagacactaagc
atctgcagtacaactctgtgggtgggccagttggacaagaggacacaacaacaagacgtt
gcctgcatactagaagaatttggacagatagagtccatcaatatgatccctccgcgtggc
tgcgcttacatcgtcatgatacacaggcaagatgccttcagggccctgcagaagctcagt
agaggaccatacaaagtaaaccagaaaaccatcaagatcgcttgggctttgaacaagggc
ataaagtctgagttcaaacagtactgggacgtagagttgggtgtcacctacataccttgg
tccaaaatgcgagaggaccagttggaagagctgaaagaaggaggaatactggatgtagac
accttatcaccagagtggagtgtagcgaggagcaaacttgaacagtcggaggaactcacc
cacaacggccgctcagaccagcagcagctcgaggaggctaaagtgctgccggtagtgtct
tcggctgctcctcccccacaggttcctccaatgcagcagccaatggtcggtgtgggttct
ctccagcctcctgtctttcccggtccaatcggcatgcctccgccatctttccctccaggc
gtcccccctcctcctttcatcaggcctggctttaaccctatgcagatgcctccaggtttt
cctcctccaggtgccatgcccttaggtcccccacctgctgccaaaggtggagttgaggac
ccgcctttggacccagcaggtctgggcaacaatagagatgacgacggtcccaacatgttt
aacaaccaaatgggacctatgggtaaccaggtaggcggtcctccaggtttacctccaggt
ggacctctaagtggacttccaggtggccctctaggtggacctccaggttcgcttccggtc
ggtcctctcggcggacctccaggcggtcttccgggtggacctcccggtgctcttccaggt
gggcatcctggaaatatccagccgggttctggaggtctgcttggtgcacggcctggtata
atcccactccagcgtcctcccgctccccctcccgcacacatgcagcgtttccctccaccc
cacggtccaagaccacctcaccccaaccttcccccaatgcccccacagatgatccccagg
ggaccacaccctcagatggtgccccacgagccccctctgtccaagggggcctttggaatg
ccccctccacacaatgtgagaccccctttccctcatgggcacggccctcctcccccacaa
ggtcctcctccgccttttatcagaccaggggttcctcgtggcctggagaggccagaagaa
atggacagcagaccattcaggggggaccggcctggattcagagaccgagagcccgagagg
gacagagactgggatcgagacagggatagagagagggaccgaggctttgggagtggaagg
cgtgcattcggcgatggaggaaggggaggaggtggtggtggtgacaaaatggatggaagg
gaaaggctcggaggatggcaggaagacggaggcaatcatcgtggaggaggatgggacaga
gacagagatcgggacagggaccgcgaccgcgatcgagacagagacagagacagacgagac
tggagagagaggcgaagcagcctcgatagagaccgggatcgtgggaggggtgacgacggg
gaaagggagcgaggcaggggggagggaggagaaaggggaagaggcgaaggggggagtcga
gagagcggcagaggagctgaaggaaagggggacaggccgaggcggtcagaacggcgagag
aggaccacgcggtgggacaaggacgaccgattggccgaactggaaaacatggacagattt
cggacctcgaacagtttagagcaaccacccgggactgctgttgccgcggaaaccagtaaa
gaaccagctgtggaaagttctcataaggacgcagaatctgaacttgaagctccgccaccg
gaggaaactcctacaggagatcctgagcccgctgagcccttaccttcagctcaaagtgag
caaacagaaactgaacagaaagcggaatcatag
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