Mugil cephalus (flathead mullet): 125022085
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Entry
125022085 CDS
T08342
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
125022085 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcep03400
]
125022085 (msh2)
DNA repair and recombination proteins [BR:
mcep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
125022085 (msh2)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
125022085
NCBI-ProteinID:
XP_047464338
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Position
16:complement(8193432..8203314)
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AA seq
936 aa
AA seq
DB search
MAVQPKQNLSMDSAAEHGFLNFIFSMSEKPDTTFRVFDRNDYYTVHGKDAIFAAKEVFKT
NGVIKYLGSGSRKLESVVLSKLNFEAFVKDLLLVRQYRVEVYRNQSKSSKEHDWKIEYKA
SPGNLTQLEEILFGGGGTGAEGCAGVVAVRFATGADGQRVVGVGYVDAAQRKMGVCEFPD
NEIFSNLESLLVQISPKECLLAQGEGNADGNKLREVVERGGVLVSDRKRADFSSKDMVQD
LNRLLRAKRGETVASNTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTTLDLGQYM
RLDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTRIEERL
DLVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRHTATLQDCYRVYQAVSQIPALIAA
LEKNSGSYQMLLQAVFLSPLRDLQGDFVKYQEMIETTLDMNQIDHHEFLVKASFDPVLSE
LREKMDTLEKSMQAVLNSAARELGLDAGKTVKLESNAMLGFYLRVTCKEEKSLRNNKKFT
TLDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIINIASGYVDPLQTLSDVIA
QLDAVASFAVASVSAPVPFVRPRLLADGCRRMELLQARHPCMETDADTAFIPNDITFVQG
VKSFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVIDSVLARVGAGDSQVK
GVSTFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHIASKIGSFCLF
ATHFHELTALAAQQPTVHNLHVTALTTRDTLTMLYRVKPGVCDQSFGIHVAELACFPPAV
LAVAKEKAEELEEFQEPVGKMSEQHEEPEAKRRRTDKQDGEKLIQDFLQKVKSLPVATMT
EEEVKVELRRMKQELTAKNNAYIHEILARCASVKTA
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaagcagaacctgtccatggacagtgcggccgagcacggcttttta
aacttcattttctccatgtcggagaaaccggacacgacgttcagggtatttgaccgcaac
gactactacaccgtccacgggaaagacgccatattcgcggcgaaggaggttttcaagact
aacggggtcatcaagtatttgggctcaggaagtcgcaagctggagagtgtggtcctgagc
aagctgaactttgaggcctttgtaaaagacttgctacttgtgaggcagtacagagtggag
gtgtacagaaatcagagcaagagcagcaaggagcacgactggaagatcgaatacaaggcc
tctccaggaaacttgactcagttggaagagattctgtttggtggtggaggaaccggagca
gagggctgtgccggagtcgtagccgtgcggtttgcgacgggagctgatggacagcgtgtg
gtcggcgttggctacgtagatgcagcccagaggaagatgggtgtttgtgagtttccagac
aatgagatcttctccaacttggagtccctgctcgtccaaatcagcccaaaggagtgtctg
ttagcccagggtgaaggcaacgctgatgggaataaactgcgggaggtggtagagcgtggg
ggtgtgctggtatctgacagaaagagggcagatttcagcagcaaggacatggttcaagat
ctcaacaggctgctgagagccaagagaggagagaccgtggcgagcaacacgctgcccgag
ctggacaaacaggtggctatgtcgtgtttggctgcagtcgtgcgtttccttgagctgctc
tctgacgagtccaacttcaactccttcagtctgaccactctggacctgggtcagtacatg
aggctggacaacgctgccgtcagagcccttaacctcttccagggttcacccgacgacacc
agtggagctcattcattggctgggctgttgaataaatgccgtacgcctcagggtcagcgg
ctcgtcaaccagtggatcaaacagccgctcatggacaaaaccagaatagaggagaggctg
gacctggtggagagttttgtatgcgactctgagctgaggcagacctgtcaggaggatttg
ctgcggcggtttcctgatcttcaccgcctggccaagaagttccaccgtcacaccgcgact
ctacaggactgctaccgcgtctaccaggctgtgagccagatccctgccctcatcgcagcc
ctggagaagaactcaggcagctaccagatgctgctgcaggcagtgttcctctcccctctc
agagacctgcagggcgacttcgttaagtaccaggagatgattgaaaccacgctggacatg
aaccagattgaccaccacgagttcctggtgaaggcgtcgttcgatccggtgctgagcgag
ctgagagaaaagatggacacgctggaaaagagcatgcaggcagtgctgaacagtgcagcc
agagagctaggtctggatgccggtaagacggtaaagctggagtccaacgccatgctgggc
ttctacctgagagtcacgtgcaaggaggagaagagtctacggaacaacaagaaattcacc
acgctggacgttcagaagaacggcgtgcgcttcacaaacagcaagctgagctccctcaac
gaggagtacaccaagagcagggaggagtacgaggaggcccagaacgccatcgtcaaggag
atcatcaacatcgcctcaggctacgtggatcccctgcagacgctgagcgacgtgatagcg
cagctggacgcggtggcgagcttcgccgtggcgtccgtctccgctcccgtgccgttcgtc
cggcctcgcctcttggccgacggctgcaggcgcatggagctgctgcaggccaggcacccg
tgcatggagaccgacgcggacaccgcgttcatacccaacgacatcaccttcgtccagggc
gtgaagagcttctacatcatcacaggaccaaatatgggcggtaagtcgacgttcatccgg
caggtgggcgtgatcgccctgatggctcagatcggctgcttcgtgccatgtgagaaggcg
gagctcagcgtgattgacagcgtcctggcccgagtgggagcgggggacagccaggtgaag
ggagtgtccaccttcatgtccgagatgctggagaccgctgccattctgcggtcggccacg
gagaactccctcatcataatcgacgagctcggcagagggacgtccacgtacgacggcttc
ggcctggcctgggccatcagcgagcacatcgcctccaaaatcggctccttctgcctcttc
gccacccacttccacgagctgacggcgctggcggcgcagcagcccaccgtccacaacctg
cacgtcacggccctgaccacccgcgacacgctcacaatgctgtacagagtcaaaccagga
gtgtgtgaccagagcttcgggatccacgttgccgagctggcctgcttcccgccggcggtg
ctggccgtggccaaggagaaggcggaggagctggaggagttccaggaacccgtaggaaag
atgtcagagcagcatgaggagcccgaggccaagagacgacgcacggacaaacaagatggg
gagaagctgatccaggactttctgcagaaggtgaagtcacttcctgtcgccaccatgacc
gaggaggaggtgaaggtggagctccggagaatgaagcaggagctgaccgccaaaaacaac
gcatacatccacgagatcctcgctcgctgtgcttctgtaaaaactgcttga
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