Mugil cephalus (flathead mullet): 125023968
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Entry
125023968 CDS
T08342
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep04140
Autophagy - animal
mcep04148
Efferocytosis
mcep05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125023968 (vps39)
04148 Efferocytosis
125023968 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
125023968 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mcep04131
]
125023968 (vps39)
Membrane trafficking [BR:
mcep04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
125023968 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
WD40_like
Beta-prop_WDR35_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
125023968
NCBI-ProteinID:
XP_047467526
LinkDB
All DBs
Position
17:complement(20126567..20151174)
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AA seq
876 aa
AA seq
DB search
MHDAYESVPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLYVVSQYKILVSLLENNIHVHDLLTFQQITVVSKAKGATLFACDLQQTSAGD
EKLRMCVAVKKKLQMYYWKDREFHELQGDFGAPDIPKSMAWCENSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGPNIVYVASNHFVWRLVPVSI
ASQIRQLLQDKQFELALQLAKMKDDSDGDKKQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPSDYRKQLHYPNPLPTLSGAELEKAHLALIDYLTQKRSHLVKQL
NDTSPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIEES
EYVLKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGVENLG
IIFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKVLQFLKEGFEELAIPYLEHIIYVWD
EKGPEFHNNLIQLYLGRVQGLMKEYLNSLSEGVQAVAAGKEGGELGEFRNKLLSFLDIST
SYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHRHYNSSVE
GNKDVYLSLLRMYLSPPDVHCLGPIKMELSEPQANLQAALQVLELHHSKLNTTKAINLLP
ANTQIREIRVFLESVLEEKAQRKRCNQVLKSLLQAEFLRVQEERIFHQQVKCVITEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRTVCPTEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcgtatgagtcggttcctattctggaaaagcttcctcttcagatcgactgt
cttgcggcttgggaggactggctgcttgttggaacgaagcctggacatctccttctctac
cgaatcaagaaagatgctggcaccaaccgctttgaggtgacgctggaaaaatccaacaag
aacttctcaaagaagattcagcagctgtacgttgtctcacagtacaaaattctcgtcagt
ctgctcgagaacaacattcatgtccacgacctcctgaccttccagcagatcaccgtggtg
tccaaagccaaaggggccaccctctttgcatgtgacctgcagcaaaccagcgctggagat
gaaaagctcagaatgtgtgttgccgttaaaaagaaactccagatgtattactggaaggac
agggagtttcatgagctgcagggggatttcggagcaccagatattccaaagtccatggcc
tggtgtgaaaactccatatgtgttggttttaaacgggactattacctcatccggatggac
ggccgtggctctattaaggagctcttccccactgggaagcagttagagcctcttgttgcg
cctctggctgacggcaaagtggctgttgggcaggacgacctcactgtggtacttaacgaa
gagggcgtttgcacccagaagtgcgccctgaactggacagatatccctatagccatggag
caccagcctccctacatcatcgcggttctgccccggtacgtggagatccggaccttcgag
ccgcggctgctggtgcagagcgtggagctgcagaggccgcgcttcatcacctcggcaggg
ccgaatatcgtgtacgttgccagcaaccactttgtttggcgcctggtgcccgtgtccata
gccagccagatccggcagcttctccaggacaagcagtttgaactggctcttcagctggcg
aagatgaaggatgattcagatggtgataagaagcagcagatacatcacatccagaatctg
tacgccttcaatttgttttgccagaagagatttgacgactccatgcaggtgttcgccaaa
ctcggcacagatcccacacacgtgattggactctacccggacctgcttccatcagactac
cgcaaacagctgcactaccccaaccctctgcctactctgtccggggccgagctggaaaag
gctcatctcgctctgatcgattacctcacccagaaacgcagccaccttgtgaagcagctg
aacgacactagtccgtctacaacgtctcctctcatggagggaacgcccaccatcaaaagc
cgcaagaaactcctgcagatcatcgacaccacgctgctgaaatgttacctgcataccaac
gtggccctcgtgtcccccctcctccgtctggagaacaaccactgccacatcgaggagagc
gagtacgtcctgaagaaggcccacaagtacagcgagctcatcattctctacgaaaagaag
ggcctgcaccagaaagctctgcaggtgctgctggaccagtccaccaaggccaactctcca
ctgaagggccacgagcgaacggtgcagtaccttcaaaggctcggagtggagaatctgggc
atcatctttgagttttctccctgggtgctgaagatctgtcctgaggatggcctgaagatc
ttcactgaagacctgacagaggtggaaactctgcccagggacaaggtgctgcagttcctg
aaggagggcttcgaggagctcgccatcccgtatctggagcacatcatttacgtctgggac
gagaagggccccgagtttcacaataacctgatccagctctacctggggagagtccaaggc
ctcatgaaagagtacctcaactcactgtcagaaggggttcaggctgttgctgcggggaag
gagggcggcgaactgggggagttcaggaacaagctgctgtccttcctggatatttctacc
agctacgagccgagcagactcatcagtgactttcccttcgatggtttgctggaggagcgg
gcgctgctcctgggccgcatgggtaaacacgagcaggcgctcttcatctacgtgcacatc
ctgaaagacacccgcatggctgaagaatactgtcaccgacattacaacagttcagttgaa
ggaaataaagacgtttatctgtccctgctgcggatgtacctgtccccccctgacgtccac
tgcctggggcccatcaagatggagctgtccgagcctcaggccaacctccaggcggccctg
caggtcctggagctgcaccacagcaaactcaacaccaccaaggccatcaatcttctcccg
gcaaacactcagatcagagagatccgggttttcctggagagcgtcctggaggagaaggct
cagaggaaacgctgcaaccaggtgctgaagagtctgctgcaggccgagttcctccgggtg
caggaggaacgcatcttccaccaacaggttaaatgtgtcatcacggaagaaaagacctgc
agagtctgcaagaagaaaataggaaacagtgcgttcgccaggtaccccaacggcgtggtc
gtgcactacttctgctgcaaagaccgcaccgtgtgtcccacggagcagtga
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