KEGG   Macaca fascicularis (crab-eating macaque): 101865574
Entry
101865574         CDS       T02918                                 
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X2
  KO
K14400  pre-mRNA cleavage complex 2 protein Pcf11
Organism
mcf  Macaca fascicularis (crab-eating macaque)
Pathway
mcf03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mcf00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    101865574 (PCF11)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mcf03021]
    101865574 (PCF11)
   03019 Messenger RNA biogenesis [BR:mcf03019]
    101865574 (PCF11)
Transcription machinery [BR:mcf03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     101865574 (PCF11)
Messenger RNA biogenesis [BR:mcf03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     101865574 (PCF11)
SSDB
Motif
Pfam: PCF11_RFEG_rpt PCF11_charged Pcf11_helical CID Pfc11_Clp1_ID Pcf11_C zf_PCFS4
Other DBs
NCBI-GeneID: 101865574
NCBI-ProteinID: XP_005579281
Ensembl: ENSMFAG00000034679
LinkDB
Position
14:join(82129620..82129811,82133478..82133603,82135827..82136015,82136402..82136596,82137787..82138901,82139311..82139494,82139598..82140081,82140616..82142183,82144027..82144123,82149754..82149873,82150356..82150458,82153603..82153786,82154364..82154519,82154911..82155003,82155535..82155570,82157167..82157382)
AA seq 1685 aa
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVSQIPSMAVKAPHQVPVQSEKSRPGPSLQIQDVKGTNRDPRLN
RMSQHSHGKDQSHRKEFLMNTLNQSDIKTSKTIPSEKLNSSKQEKSKSGEKITKKELEQL
DSKSKSKSKSPSPLKNKLSHTKDLKNQESESMRLSDMNKRDPRLKKHLQDKTDGKDDDVK
EKRKTAEKKDKDEHMKSSEHRLAGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKRS
RSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTTPSRE
DRNAKRSTKQDIRDPRRMKKTEEERPQETTNQHSTKSGTEPKENVENWQSSKSAKRWKSG
WEENKSLQQVDEHSKPPHLRHRESWSSTKGILSPRAPKQQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDDFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPGRPSVARDGPTKMI
FEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGL
RFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQ
QGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFE
GPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQ
PGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQTSRFDIPLGLQGTRFDNHPSQRLESVSF
NQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHY
FDEKNLQSSQFGNFGNIPAPMTVGNIQASQQVLSGVAQPVAFGQGQQFLPVHPQNPGFVQ
NPSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTLSEVAAQPPPEEEEDQN
EDQDVPDLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNR
TEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQ
SVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDC
TPSPSKTPAENPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIATPSEIKTEND
TVESV
NT seq 5058 nt   +upstreamnt  +downstreamnt
atgtcagagcagacgccggccgaggccggtgctgcgggggcccgggaggacgcctgtcgg
gattatcagtcatcgctcgaagacctgaccttcaatagcaagccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatt
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactaggaaaagtttatttaagttacgttcc
acatgggatgaaatattccctttgaagaaactttatgccctggatgtcagagtcaattca
ttagatcctgcttggcctattaaacctctaccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcccgaggagccttcaacacctggtacagtggtc
agttcccctagcatctccactcctccaattgttcctgatatacaaaagaatcttacacaa
gaacaactaataaggcagcagttactggcaaagcaaaaacagttgttagaacttcagcag
aaaaagctggagcttgagctagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggaaacatccaatttaggtcctggatctgcaccatctaaattacatgtttcacag
attccctctatggcagttaaagctcctcatcaggttcctgtgcaatctgagaaaagccgt
ccaggaccatccttacaaattcaggatgtgaaaggaactaaccgggatcctcgtctgaac
aggatgagccaacattctcatggaaaagatcaaagtcacaggaaagaatttctaatgaac
acattaaaccagtctgatattaagacaagtaaaactataccctctgaaaaactaaattca
tccaagcaagaaaaaagtaaatcaggtgaaaaaataaccaagaaagaacttgaacaatta
gattctaaatcgaaatcgaaatcaaaatcaccatcacctttgaaaaacaaattgtctcac
acaaaagacttgaaaaatcaagaatcagaaagtatgaggttgtctgatatgaacaagaga
gacccaagattaaaaaaacatcttcaggataagactgatggcaaagacgatgatgtgaaa
gagaagagaaaaactgcagaaaaaaaggataaagatgagcacatgaagtcatctgaacac
agactggctggaagtagaaataaaatcataaatggcattgtacaaaaacaggatacaata
acagaagagtcagaaaaacaggggacaaaaccagggagatcgagtactagaaagcgatca
agatctcgatcacccaagtctaggtcaccaattatacattccccaaagagaagagatagg
cggtcacccaagcgaaggcaaagaagtatgtctccaacgtcgacacctaaagctggaaag
attcgccaatctggagttaagcagtcacatatggaagagtttacaacaccttctagggaa
gacagaaatgctaagagaagtactaaacaggatattcgggatccaaggcgaatgaaaaag
actgaagaggagcggccacaagaaactacaaatcagcattctacaaagtcaggcactgaa
ccaaaggagaatgtagaaaactggcaaagttccaagtctgccaaaagatggaaatctggt
tgggaagaaaataaaagcttacagcaggttgatgaacatagtaaacctcctcatctgagg
catagggagagctggtcaagcactaaaggaattttatcgcctcgagccccaaagcagcaa
cagcatcgattaagtgtagatgccaatcttcagattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gacttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtgcgagaagagcagagatctccattcaatgat
cgttttccacttaagcgacctcgatatgaagattcagataaaccatttgtagatagccca
gcatcaagattcgccggcctggatacaaatcagcgacttacagctttagctgaagacaga
ccattatttgatggacctggtaggccatcagtagcaagagatggcccaaccaagatgatt
tttgaaggacctaataaattaagccctcgaattgatggacctcccacaccagcttctctt
cggtttgatgggtcaccaggacaaatggggggaggaggccctttgagatttgaaggacca
caaggtcagctaggaggtgggtgtcctttgagatttgaaggtcctccaggaccagtgggg
acacctctgcggtttgagggcccaattggtcaagcaggaggaggtggttttcggtttgaa
ggttcccctggtctgaggtttgagggatctgcaggtggtttacgatttgagggaccaggg
ggccagcctgtgggtggtctgaggtttgagggacatcgtggtcaacccgtgggtggtcta
aggtttgagggacctcatgggcagcctgtgggtggacttagatttgataatccccgaggt
cagcctgtaggtggacttagatttgaggggggtcatggtccatcaggggctgctattagg
tttgatggacctcatggtcagccaggaggtggaatcagatttgagggccctttgctacag
caaggagttggaatgaggtttgagggcccccatggtcagtcagtagctggtctgagattt
gagggacaacataaccaacttggtggaaaccttaggtttgagggtccacatggccaacca
ggggttggtatcaggtttgaaggccctttagttcaacaaggaggtggaatgaggtttgag
ggtccttctgtaccaggaggtggcctgagaattgaagggcctctgggtcaaggtggtcca
agatttgaaggttgtcatgctttaaggtttgatgggcagccaggtcagccgtcactcttg
ccaagatttgatggattacatggtcagccaggtcctagatttgaaaggactcctggtcag
ccaggccctcagaggtttgatggaccacctggacagcaggttcagcccagatttgatggt
gtacctcaaagatttgatggtccacaacatcagcagacatcaaggtttgatattcctctt
ggtcttcaaggcacaagatttgacaatcatccttcacaaaggcttgaatcagtatctttc
aatcagactggtccatataatgatccacctggcaatgcttttaatgccccatctcaagga
ctacagttccaaagacatgaacaaatatttgattcacctcaaggaccaaattttaatgga
ccacatggccctggaaaccagagtttctctaatccacttaacagagcttctggacactat
tttgatgaaaaaaatcttcagagttctcaatttggaaactttggcaatatacctgctcca
atgacagtaggaaatattcaggcatctcaacaggttctgagtggtgttgctcagccagta
gcttttggtcaaggacaacagtttttaccagttcatccacaaaatcctggatttgttcag
aatccttcaggagcactccctaaggcgtatcctgataatcatctcagtcaagtggatgta
aatgaattgttttcaaaattgctaaaaacaggaattctcaaattgtctcaacctgattca
gctacaacactaagtgaagtagctgctcagcctccccctgaagaggaggaagatcaaaat
gaagatcaagatgttccagatcttactaattttacagttgaagaattgaaacaacgttat
gacagtgttataaatcgactgtacactggtattcagtgttactcttgtggaatgaggttt
acaacatcacagacagatgtttatgcggatcatttggactggcattatcggcaaaataga
actgaaaaggatgttagcagaaaagtcactcatagacgttggtactacagtttaacagac
tggatagaatttgaggagatagctgatctggaagaacgggcaaagagccagttttttgaa
aaggtgcatgaagaagttgtgctcaaaactcaagaggctgctaaagaaaaagagttccaa
agtgtacctgctggaccagctggagcagttgagagttgtgaaatctgtcaagaacaattt
gaacaatactgggatgaagaggaggaggaatggcatttgaaaaatgctattagagtagat
ggaaagatttatcatccatcatgttatgaagattatcaaaatacatcttcatttgattgt
acaccatctcccagcaagacaccagctgaaaaccccttgaatattatgttgaacattgtc
aaaaacgaattgcaggaaccctgtgaaagtcccaaagttaaggaagaacgaattgataca
ccaccagcttgtacagaggaaagcatagcaacaccctctgaaattaaaacagaaaatgac
acagttgagtcagtttaa

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