KEGG   Macaca fascicularis (crab-eating macaque): 101866172
Entry
101866172         CDS       T02918                                 
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
mcf  Macaca fascicularis (crab-eating macaque)
Pathway
mcf03013  Nucleocytoplasmic transport
mcf03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mcf00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    101866172 (UPF1)
   03015 mRNA surveillance pathway
    101866172 (UPF1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcf03019]
    101866172 (UPF1)
Enzymes [BR:mcf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     101866172 (UPF1)
    5.6.2.5  RNA 5'-3' helicase
     101866172 (UPF1)
Messenger RNA biogenesis [BR:mcf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     101866172 (UPF1)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     101866172 (UPF1)
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase NPHP3_N ATPase nSTAND3 NAT10_TcmA_helicase DEAD UvrD-helicase SRP54 AAA_16 UvrD_C_2 AAA_22
Other DBs
NCBI-GeneID: 101866172
NCBI-ProteinID: XP_005588539
Ensembl: ENSMFAG00000037748
LinkDB
Position
19:join(19235311..19235541,19251065..19251204,19252825..19252914,19255143..19255310,19255761..19255941,19257481..19257642,19258287..19258404,19258553..19258651,19259869..19259977,19260147..19260306,19260392..19260510,19261528..19261692,19261789..19261903,19262477..19262620,19262922..19263135,19265897..19266014,19266395..19266551,19267583..19267725,19269014..19269188,19269729..19269810,19270825..19270986,19271097..19271314,19271601..19271720)
AA seq 1129 aa
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPGGAGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPI
HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVII
WLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNF
QVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLP
DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQ
LTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSS
ADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVP
VVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALS
AFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTE
AANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAF
QGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLL
NYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDR
SSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRG
TPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQ
PGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq 3390 nt   +upstreamnt  +downstreamnt
atgagcgtggaggcgtacgggcccagctctcagactctcactttcctggacacggaggag
gccgagctgctcggcgccgatacacagggctccgagttcgagttcaccgactttactctt
cctagccagacgcagacgccccccggcggccccggcggcccgggcggtggcggcgcggga
ggcccaggcggcgcgggcgcgggcgccgcggcgggacagctcgacgcgcaggttgggccc
gaaggcatcctgcagaatggggctgtggacgacagtgtagccaagaccagccagttgttg
gccgagttgaacttcgaggaagatgaagaagacacctattacacgaaggatctccccata
cacgcctgcagttactgtggaatacacgatcctgcctgcgtggtttactgtaataccagc
aagaagtggttctgcaacggacgtggaaatacttctggcagccatattgtaaatcacctt
gtgagggcaaaatgcaaagaggtgaccctgcacaaggacgggcccctgggggagacagtc
ctggagtgctacaactgcggctgtcgcaatgtcttcctcctcggcttcatcccagccaaa
gctgactcggtggtggtgctgctgtgcaggcagccctgtgccagccagagcagcctcaag
gacatcaactgggacagctcgcagtggcagccactgatccaggaccgctgcttcctgtcc
tggctggtcaagatcccctccgagcaggagcagctgcgggcgcgccagatcacggcacag
cagatcaacaagctggaggagctatggaaggaaaacccttctgccacgctggaggacctg
gagaagccgggggtggacgaggaaccgcagcacgtcctcctgcggtatgaggacgcctac
cagtaccagaacatattcgggcccctggtcaagctggaggccgactatgacaagaagctg
aaggagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaagaag
agaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatt
tggttaagagacatgcggctcatgcagggggatgagatatgcctgcggtacaaaggggac
cttgcgcccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggcgat
gagattgccattgagctgcggagcagcgtgggtgcacccgtggaggtgactcacaacttc
caggtggattttgtgtggaagtcgacctcctttgacaggatgcagagtgcattgaaaacg
tttgctgtggacgagacctcagtgtccggctacatctaccacaagctgctgggccacgag
gtggaggacgtaatcatcaagtgccagctgcccaagcgcttcacggcgcagggcctcccc
gacctcaaccactcccaggtttatgccgtgaagactgtgctgcaaagaccgctgagcctg
atccagggcccgccaggcacggggaagacagtgacgtcggccaccatcgtctaccacctg
gcccgacaaggcaacgggccggtgctggtgtgtgctccgagcaacatcgccgtggaccag
ctaacagagaagatccaccagacggggctgaaggtcgtgcgcctctgtgccaagagccgc
gaggccatcgactccccagtgtctttcctggccctgcacaaccagatcagaaacatggac
agcatgcctgagctgcagaagctgcagcagctgaaagatgagactggggagctgtcgtct
gccgacgagaagcggtaccgggccttgaagcgtaccgcggagagagagctgctgatgaat
gcagatgtcatctgctgcacgtgtgtgggcgccggcgacccaagactggccaagatgcag
ttccgctccattttaatcgacgaaagcacccaggccactgagccagagtgcatggttccc
gtggtccttggggccaagcagctgatccttgtaggtgaccactgccaactgggcccggtg
gtgatgtgcaagaaggcggccaaagccgggctgtcgcagtcgctcttcgagcgcctggtg
gtgctgggcatccggcccatccgcctgcaggtccagtaccggatgcaccctgcactcagc
gccttcccgtccaacatcttctacgagggctccctccagaatggtgtcactgcagcggat
cgtgtgaagaagggatttgacttccagtggccccagcccgataaaccgatgttcttctac
gtgacccagggccaagaggagatagccagctcgggcacctcctacctgaacaggaccgag
gctgcgaacgtggagaagatcaccacgaagttgctgaaggcgggcgccaagccggaccag
attggcatcatcacgccctacgagggccagcgctcctacctggtgcagtacatgcagttc
agcggctccctgcacaccaagctctaccaggaggtggagatcgccagtgtggacgccttt
cagggacgcgagaaggacttcatcatcctgtcctgtgtgcgggccaacgagcaccaaggc
attgggtttttaaatgaccccaggcgtctgaacgtggccctgaccagagcaaggtacggc
gtcatcatcgtgggcaacccgaaggcgctgtcgaagcagccactctggaaccacctgctg
aactactacaaggagcagaaggtgctggtggaagggccgcttaacaacctgcgcgagagc
ctcatgcagttcagcaagccgcgcaagctggtcaacaccatcaacccgggagcccgcttc
atgaccacagccatgtatgatgccagggaggccatcatcccaggctccgtctatgatcgg
agcagccagggccggccctccagcatgtacttccagacccatgaccagattggcatgatc
agtgccggccccagccacgtggctgccatgaacattcccatccccttcaacctggtcatg
ccgcccatgccaccgcctggctattttggacaagccaacgggcctgctgcaggccgaggc
accccgaaaggcaagactggccgtgggggacgccagaagaaccgctttgggcttcctggg
cccagccagaccaacctccccaacagccaagccagccaggatgtggcgtcacagcccttc
tctcagggcgccctgacgcagggctacatctccatgagccagccctcccagatgagccag
cccggcctctcccagccggagctgtcccaggacagttaccttggtgatgagtttaaatca
caaatcgacgtggcgctctcgcaggactccacgtaccagggagagagggcgtaccagcat
ggcggggtgacggggctgtcccagtactaa

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