KEGG   Macaca fascicularis (crab-eating macaque): 102134259
Entry
102134259         CDS       T02918                                 
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X2
  KO
K13126  polyadenylate-binding protein
Organism
mcf  Macaca fascicularis (crab-eating macaque)
Pathway
mcf03015  mRNA surveillance pathway
mcf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mcf00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    102134259 (PABPC4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102134259 (PABPC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcf03019]
    102134259 (PABPC4)
   03041 Spliceosome [BR:mcf03041]
    102134259 (PABPC4)
Messenger RNA biogenesis [BR:mcf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     102134259 (PABPC4)
   mRNA cycle factors
    Stress granule specific factors
     102134259 (PABPC4)
Spliceosome [BR:mcf03041]
 Complex C
  Other components
   Complex C specific factors
    102134259 (PABPC4)
SSDB
Motif
Pfam: RRM_1 MLLE RRM_5 RRM_7 RRM_occluded RRM_10 RBD_RDR6 RRM_3 POP1_C ApbA_C
Other DBs
NCBI-GeneID: 102134259
NCBI-ProteinID: XP_005543928
Ensembl: ENSMFAG00000041481
LinkDB
Position
1:join(195332789..195332981,195336117..195336310,195337375..195337490,195338713..195338852,195339026..195339120,195339774..195339911,195340873..195340968,195343316..195343588,195343915..195344002,195344148..195344219,195344758..195344844,195344939..195345066,195346269..195346362,195346480..195346610,195346896..195346985)
AA seq 644 aa
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGSECPDRLAMDF
GGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQ
APQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNS
ELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS
NT seq 1935 nt   +upstreamnt  +downstreamnt
atgaacgctgcggccagcagctaccccatggcctccctgtacgtgggcgacctgcactcg
gacgtcaccgaggccatgctgtacgaaaagttcagccccgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgctccctgggctatgcctacgtcaacttccag
cagccggccgacgctgagcgggctttggacaccatgaactttgatgtgattaagggaaag
ccaatccgcatcatgtggtctcagagggatccctctttgagaaaatctggtgtgggaaat
gtcttcatcaagaacctggacaaatctatagataacaaggcactttatgatactttttct
gcttttggaaacattctatcctgcaaggtggtgtgtgatgagaacggctctaagggttat
gcatttgtccacttcgagacccaagaggctgccgacaaggccatcgagaagatgaatggc
atgctcctcaatgaccgcaaagtatttgtgggcagattcaagtctcgcaaagagcgggaa
gctgagctgggagccaaagccaaggaattcaccaatgtttatatcaaaaactttggggaa
gaggtggatgatgagagtctgaaagagctattcagtcagtttggtaagaccctaagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtgagttacgaaaaa
cacgaggatgccaataaggctgtggaagagatgaatggaaaagaaataagtggtaaaata
atatttgtaggccgtgcacaaaagaaagtagaacggcaggcagagttaaaacggaaattt
gagcagctgaaacaggagagaattagtcgatatcagggagtgaatctctacattaagaac
ttggatgacactattgatgatgagaaattaaggaaagaattttctccttttggatcaatt
accagtgctaaggtaatgctggaggatggaagaagcaaagggtttggcttcgtctgcttc
tcatctcctgaagaggcaaccaaagcagtcactgagatgaatggacgcattgtgggctcc
aagccactatatgttgccctggcccagaggaaggaagagagaaaggctcacctgaccaac
cagtatatgcaacgagtggctggaatgagagcacttcctgccaatgccatcttaaatcag
ttccagcctgcggcgggtggctacttcgtgccagcagtcccacaggctcagggaaggcct
ccatattatacacctaaccagttagcgcagatgaggcctaatccacgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatacgccagtctgggcctcgtcca
actcttcgccatctggctccaactgggtctgagtgcccggaccgcttggctatggacttt
ggtggggctggtgccgcccagcaagggctgactgacagctgccagtctggaggcgttccc
acagctgtgcagaacttagcgccacgcgctgctgttgccgctgctgctccccgtgctgtt
gccccctacaaatacgcctccagtgtccgcagccctcatcctgccatacagcctctgcag
gcaccccagcctgcggtccatgtgcaggggcaggagccactgactgcctccatgctggct
gcagcacccccccaggaacagaagcagatgctgggagaacgcttgttcccactcatccaa
acaatgcattcaaacttggctgggaagatcacgggaatgctgctggagatcgacaactct
gagctgctgcacatgttagagtcccccgagtctctccgctccaaggtagatgaagctgta
gcagttctacaggctcatcatgccaagaaagaagctgcccagaaggtgggcgctgttgct
gctgctacctcttag

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