KEGG   Methyloceanibacter caenitepidi: GL4_0272
Entry
GL4_0272          CDS       T03636                                 
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
mcg  Methyloceanibacter caenitepidi
Brite
KEGG Orthology (KO) [BR:mcg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:mcg03016]
    GL4_0272
Enzymes [BR:mcg01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     GL4_0272
Transfer RNA biogenesis [BR:mcg03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    GL4_0272
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS
Other DBs
NCBI-ProteinID: BAQ15742
UniProt: A0A0A8JZH2
LinkDB
Position
295105..295662
AA seq 185 aa
MSMLRAGLHGARWIDPEYYHLTLRFIGDVDGATARDFTEALGELVAAPFTVKLNGLDSFG
GKKPRTIFACVAPSPELEALQHAHDGAARVAGLAPERRKFTPHVTVARLRGTRPDAVAAY
LQNAGLISETFTVKRFVLYSSRNSVGGGPYVVEAAYDLDDEEVDYGDDYYGGYEFDHPPL
FGIDP
NT seq 558 nt   +upstreamnt  +downstreamnt
ttgtcgatgctacgggccggcctccatggggcccgctggatcgacccggagtactaccac
ctcacattgcgcttcattggcgacgtggacggcgcgacggcccgcgatttcaccgaggct
ctaggcgaattggtcgccgcgcccttcaccgtcaagctgaacggtctcgatagcttcggc
ggcaagaagccccgtacgatcttcgcttgcgtcgcgccctcgcccgagctcgaagcgctg
cagcacgcccatgatggggccgcgcgggtcgccggtctcgcgccggagcgccgcaagttc
acgccgcacgtgacggtcgcccgcctgcgcggcaccaggccagatgcggtggccgcctat
cttcagaatgccggactgatctccgagaccttcacggtgaagcgtttcgttctttactcg
tcgcgcaactcggtcggcggcggcccctatgtcgtcgaggcggcctacgatctcgatgac
gaggaggtggactacggcgacgactactatggcggctacgagttcgatcacccgccgctc
ttcgggatcgatccttaa

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