KEGG   Methyloceanibacter caenitepidi: GL4_0325
Entry
GL4_0325          CDS       T03636                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
mcg  Methyloceanibacter caenitepidi
Pathway
mcg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mcg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GL4_0325
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mcg03021]
    GL4_0325
   03019 Messenger RNA biogenesis [BR:mcg03019]
    GL4_0325
Transcription machinery [BR:mcg03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     GL4_0325
Messenger RNA biogenesis [BR:mcg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     GL4_0325
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 NACHT S1CSD-TOTE-2 DUF7326 TetR_C_39
Other DBs
NCBI-ProteinID: BAQ15795
UniProt: A0A0A8JYZ4
LinkDB
Position
338062..339327
AA seq 421 aa
MQEMKLQDLKAKSPTELLSFAEEVEVENANAMRKQELMFAILKQLAAREVDITGQGVVEV
LQDGFGFLRSPDSNYLAGPDDIYVSPSQIRRFGLRTGDTVEGQIRSPKEGERYFALLKVN
TINFEDPEKQRHKIHFDNLTPLYPDERLEMETEDPTRKDHTGRVIDIVAPIGKGQRGLIV
AQPRTGKTVILQNIAHAITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAA
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEVVLDRKVADKRVFPA
IDIARSGTRKEELLVDKDQLKKMYVLRRILNPMGTMDAIEFLVDKLKQTKNNAEFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
gtgcaggaaatgaagctgcaagatttgaaggccaaatcgccgacggagcttttgagcttc
gccgaggaggtcgaagtcgagaacgcgaacgccatgcgcaagcaggaactgatgttcgcg
atcctgaaacaactcgccgcccgggaggtggacatcaccggccagggcgtggtcgaggtg
ctgcaggacggattcggctttctacggtcgccggattcgaactatctggccggccccgac
gacatctacgtttcgccctcgcagatccggcgcttcggccttcggaccggcgacacggtc
gaggggcagatcagaagccccaaggaaggcgaacgctatttcgcgcttctcaaggtcaac
acgatcaatttcgaggacccggagaagcagcgccacaagatccatttcgacaatctgacg
ccgctctacccggacgagcgtctcgagatggagacggaggatccgacgcggaaggaccat
actggacgggtcatcgacatcgtggcgcccatcggtaagggccagcgtggcttgatcgtg
gcgcagccgcgcacgggtaagaccgtgattctccagaatatcgcccacgcgatcaccgcc
aatcatccggagtgctatctgatcgtgctcctgatcgacgagcgcccggaagaagtgacg
gacatgcagcgctccgtgaagggtgaggtcgtgtcctccaccttcgacgagccggccgcg
cgccacgtgcaggtagccgagatggtgatcgagaaggccaagcgcctggtggagcatggc
cgcgatgtggttatcctcttggactcgatcacccgtttgggccgcgcctacaacacggtg
gttccctcttccggcaaggtgctgaccggcggtgtcgacgcgaacgcgctgcagcgcccg
aagcgtttcttcggcgcggcgcgaaatatcgaagaaggcggttcgctgacgatcatcgcc
acggccctgatcgacacgggcagtcgcatggacgaagtcatcttcgaagagttcaagggc
accggtaactccgaagtcgtgctcgaccgtaaggtcgccgacaagcgcgtgttcccggct
atcgacatcgcccggtccggcacccgaaaagaggagctgctggtcgacaaggatcagctc
aagaagatgtacgtgctccgccgtatcctgaaccccatgggcaccatggatgcgatcgag
ttcctggtcgacaagctgaagcagaccaagaacaacgccgagttcttcgactcgatgaat
acgtag

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