Methyloceanibacter caenitepidi: GL4_0539
Help
Entry
GL4_0539 CDS
T03636
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
mcg
Methyloceanibacter caenitepidi
Pathway
mcg02020
Two-component system
mcg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mcg00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GL4_0539
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GL4_0539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcg03021
]
GL4_0539
Transcription machinery [BR:
mcg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GL4_0539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Arg_repressor
Motif
Other DBs
NCBI-ProteinID:
BAQ16004
UniProt:
A0A0A8K1Y0
LinkDB
All DBs
Position
560325..561866
Genome browser
AA seq
513 aa
AA seq
DB search
MAINAKLEMRQTQSLVMTPQLQQAIKLLQLSNMELSAFVEGELERNPLLERGDGDGSSSQ
PTEDNPAERSDEKSDGAADARDSDNWVDLESGGDNNRTEDLDADPRDMFPDSEDFVPGAV
MDSGWSGLTHSGPGVSEDSADLEAYVAEEKTLRLHLSEQLTLAFADPAKRMIGQHIIDMT
DEAGYLRGELDLLADQLGAPLDLIEETLRQMQGFDPCGVFARDLRDCLTLQLKEQDRCDP
AMAALIDNLHLLAAHDLVALKRATGVSDEDLRDMIAEVKRLNPKPGLEFGATPAQPIVPD
VLLRTLPDGSYHVELNSDTLPRVLVNQTYYAKVTKGPLAKDDKSYLVDCLQTANWLVKSL
DQRARTILKVSQEIVRQQDAFFTYGVRHLRPLNLKTVADAISMHESTVSRVTANKYMATN
RGLFELKYFFTSAIAATGEGDFHSSEAVRHRIREMIDAEPAEDVLSDDKIVERLKVDGID
IARRTVAKYREALGIPSSVQRRRQKRMALAASA
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcaacgcaaagctcgaaatgcgccagacccagagtctggtcatgacgcctcag
ttgcagcaggccatcaagctcctgcaactgtcgaacatggagctgagcgcttttgtggag
ggtgagctcgaacgcaacccgttgctcgagcggggcgatggtgacggttcttctagtcag
cctaccgaggataatcctgccgaacggtcggatgagaaaagcgacggcgcggcggacgcg
cgggattccgacaattgggtcgatcttgagtccggcggcgacaacaaccggacggaggac
ctcgacgccgatccgcgcgacatgtttcccgactcggaggatttcgttccgggcgccgtg
atggacagcggctggagcggcctgacgcattccgggcctggcgtgtccgaagatagcgcc
gacctcgaagcttatgtggccgaggaaaagacgttgcggctccatctgtcggaacagttg
acgctcgctttcgccgatcccgcgaaacgcatgatcggccagcacatcatcgatatgacg
gatgaagccggttatctgcgcggcgagctggacctgctcgccgaccagctcggagcgcca
ctcgatctgatcgaagaaacgcttcggcagatgcagggcttcgatccctgcggagtcttc
gcacgcgacctgcgcgattgtcttacgctccagctaaaggagcaggaccgatgcgatccc
gccatggccgcgctcatcgacaacctgcacctgcttgctgcccacgacctcgtcgccttg
aagcgcgccacgggcgtcagcgacgaggatctccgggatatgatcgccgaggtgaagcgg
cttaatccgaagcccggcctggagttcggtgcgacacccgcgcagcccatcgtgccggat
gtgctgctccggaccttgccggacggcagctatcacgtggaactcaattcggacacgctg
ccgcgcgtcctcgtcaaccagacctattatgcgaaggtcaccaagggtccgctcgccaag
gacgacaagagctaccttgtcgattgtctgcagactgcaaactggctggtcaaaagcctc
gaccagcgggcgcgcaccatcctgaaagtgtcccaggaaatcgtccgtcagcaggacgcg
ttcttcacctacggcgtccggcacttgcggccactcaacctcaagaccgtcgccgatgcg
atttcgatgcacgaatcgacggtgagccgcgtgacggccaacaagtacatggcgacgaat
cgcggtctgtttgagctgaaatacttcttcacgtccgcgatcgccgccaccggcgagggc
gatttccattcttcggaagccgtgcggcacaggattcgcgaaatgatcgacgcggagcct
gcggaagacgtgttgtccgacgacaagattgtcgagcgcctcaaggtcgacggaatcgat
atcgcgcgccgtaccgttgcaaaataccgcgaggcgttgggtatcccgtcctcggtccag
cgccggcgacagaagcgtatggcgttggcggcaagcgcctag
DBGET
integrated database retrieval system
