Methyloceanibacter caenitepidi: GL4_2083
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Entry
GL4_2083 CDS
T03636
Name
(GenBank) metallo-beta-lactamase family protein, RNA-specific
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mcg
Methyloceanibacter caenitepidi
Pathway
mcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GL4_2083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcg03019
]
GL4_2083
Messenger RNA biogenesis [BR:
mcg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GL4_2083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
DUF5865
Motif
Other DBs
NCBI-ProteinID:
BAQ17526
UniProt:
A0A0A8K418
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Position
2165236..2166924
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AA seq
562 aa
AA seq
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MAAKDSRNKNRLVFVPLGGVGEIGMNLYLYGYGQKNAYTWLIVDMGVTFGGEYEPGIDVI
LPDIRFLEEERHNIAGLVLTHAHEDHYGAIPDLWPLIGRVPIYATPFTAAMLRGKLGEAR
MDDDDLPLEIVPLGARRQIGPFDVELISMSHSIPEPTALAIRTPLGTALHTGDWKLDETP
LTSAPTDENRLREIGRDGVDALICDSTNAIREGISPSEAEVAENLITLIKKAPACVAVTT
FASNVARLGSVAKAAQAAGRELVVVGRAMYRVIEAAQATGYLDPELRFHQETAFRQFPAD
KVVALCTGSQGEPRAALARIAAGEHPHVSLKKGDWVIFSSRTIPGNEKSVGRIQNALSDN
AIEILTDQDALVHVSGHPRRGELEQLYSWLKPHIAVPMHGEGRHLEAHAELAEDLGVPEV
VRARNGTLVQLLPKPAGIVDDVPVGRLYRDGAILTSSDEGQVRDRRKLSYAGIAAVSLVL
TTKGGLVADPEVTLTGLPEEDNYGVPLEEIARDAAIGTVESIPRPRRKDPQLVSEAVRRA
VRAALGQAWGKKPICTVLTTVL
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaaaggactcaagaaacaagaaccgcctcgtcttcgtcccgctcggcggcgtg
ggcgagatcggcatgaacctgtacctttacgggtacggtcagaaaaacgcctatacctgg
ctcatcgtcgacatgggcgtgacattcggcggcgaatacgagccgggcatcgacgtcatc
ctgccggacattcgcttccttgaagaggaacggcacaatatcgcagggctggtgctgacc
catgcccacgaggaccattacggcgccatccccgatctttggcccttgatcgggcgggtt
ccgatctatgccacgcccttcacggccgcaatgctgcgcggaaagctcggcgaggcgcgt
atggacgacgacgacctgccgctcgagattgtgcccttgggcgcacggcgccagatcggt
ccgttcgatgtcgaactcatctcgatgtcccattcgattccggaacccacggcgctggcg
atccgcacgccgctcggaacggcgctccacacgggtgactggaagctcgacgagacgccg
ctgaccagtgcgccgacggacgaaaaccgtctgcgcgagatcggccgcgacggagtcgat
gcgctgatctgcgattccaccaacgccatacgtgaaggcatctcgccttcggaggcggag
gtcgccgaaaacctgatcacgctgatcaagaaggcgccggcttgcgtcgccgtcacgacc
ttcgcctccaatgtcgcccggctcggctcggtggcgaaggccgctcaggccgcgggccgc
gaactcgtcgtcgtgggccgcgccatgtaccgggtgatcgaagcggcccaagcgaccggc
tatctcgacccggaattgcgctttcatcaagaaactgccttccgacaattcccggccgac
aaggtcgtggccctatgcacgggaagccaaggcgagccgcgcgcggcgctggcgcgcatc
gcggcaggcgaacacccgcatgtctcgctcaagaagggcgactgggtgatcttctcctcg
cggacaattcccggaaacgagaaatccgtcggacgcatccagaatgctctgtccgacaac
gccatcgagattctcaccgaccaggatgcgctggtgcacgtgtccggccatccgcgccgc
ggggaattggagcagctgtattcttggctgaagccgcacatcgccgtgccgatgcacggt
gagggacggcatctggaagcgcacgcagaactggcagaggacctcggtgtcccggaggtc
gtccgggcccgcaatggcacgttggtacagcttctgccgaagcctgctgggatcgtcgac
gacgtgcccgtggggcggctctatcgcgacggcgctatcttgacgtcgtccgatgagggc
caggtccgggaccgccgcaagctcagctatgccggtatcgccgccgtatcccttgtcttg
accacgaaaggcggactggtcgccgaccccgaggtgacgctgacggggctgcccgaggag
gacaattacggcgttccgctcgaggaaatcgcgcgcgacgccgcaatcggaacggtcgag
agcattccgcgcccgcgccgcaaagacccgcaacttgtctccgaagcggtgcgccgcgcc
gtgcgggcggccctggggcaagcctggggcaagaagcctatctgtaccgtgttgacgacc
gtgctctaa
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