KEGG   Methyloceanibacter caenitepidi: GL4_2405
Entry
GL4_2405          CDS       T03636                                 
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
mcg  Methyloceanibacter caenitepidi
Brite
KEGG Orthology (KO) [BR:mcg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:mcg03016]
    GL4_2405
Enzymes [BR:mcg01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     GL4_2405
Transfer RNA biogenesis [BR:mcg03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    GL4_2405
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC
Other DBs
NCBI-ProteinID: BAQ17841
UniProt: A0A0A8K4Z3
LinkDB
Position
2472584..2473753
AA seq 389 aa
MNLITTTEELEAACADLAKAPFIAVDTEFMREQTFWPRLCLIQIAGGDTEVLIDNLAPGI
DLKPFFDLMVDENVLKVFHSARQDIEIVHHMAGVVPHPIFDTQVAAMVCGFGEAVSYAML
VKRLLGRNLDKSSRFTDWSRRPLSERQLTYALGDVTHLRDLFPKLKAQLDKSERASWLIE
EMAVLTDPATYELHPEHAWRRLKMRIKTQKALAVLMELAAWREREAQSQDVPRSRVLKDE
ALYDIAGQAPRTVEDLGALRSLHNGFARSSRGRGVLEAVERGLARDPASVPPLQRGEPMP
PEAQAVMDLLRVLLKATAGRHGVAPKLIATSDELEQIARSNDADTAALRGWRLKLFGEDA
LALKRGELALTIRKGSVTVLAAEEPEDRS
NT seq 1170 nt   +upstreamnt  +downstreamnt
atgaatctcatcacaaccacagaagagcttgaggcggcctgcgccgacctcgccaaggcc
ccgttcattgcggtcgacaccgaattcatgcgcgagcagaccttctggccgcgcctgtgc
ctcattcagatcgcaggcggcgacaccgaggtccttatcgacaatctggcgccgggcatc
gacttgaagccgttcttcgacctgatggtcgacgaaaacgtcctgaaggtctttcattct
gcccgccaagacattgaaatcgttcatcatatggcgggtgtggtgccccaccccatcttc
gacacgcaagtggcggcgatggtctgcggcttcggcgaggcggtcagctacgccatgctt
gtgaagcgtctgctaggccgcaatctggataagagttcgcgcttcaccgattggagccgc
cgcccgctctcggagcggcaactcacctatgccttgggcgacgtgacccatctgcgcgac
ctgtttcccaagctcaaggcacagctcgacaagtccgagcgggcgagctggctcatcgag
gagatggccgtcctgaccgaccctgccacctacgagctccatccggagcacgcttggcgg
cggctcaagatgcgcatcaagacgcaaaaggcgctcgccgttctcatggagctggcggct
tggcgcgaacgcgaggcgcaaagccaggacgtcccccgctcgcgtgttctaaaagacgag
gcgctctacgacattgccggccaggcgccgcgtacggtcgaagacctcggggccctgcga
tccttgcacaacggcttcgcccggtcctcgcgcggccgcggcgtgctggaggctgtggag
cgcggccttgcgcgcgaccctgcctcggttcctccgcttcagcgcggcgagccgatgccg
cccgaagcgcaagcggtaatggacctgttgcgtgtgctgctgaaggcgacggcgggacgt
cacggcgtcgcgcccaagctgatcgccacatcggacgaactcgagcagatcgcccggtcg
aacgacgcggacaccgccgcactgcgaggctggcggctcaagcttttcggtgaggacgcg
ctggcgctcaagcggggcgaactggccctgacgatccgcaagggatcggtgacggtgcta
gcggcggaagaaccagaagaccgctcctag

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