Methyloceanibacter caenitepidi: GL4_2405
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Entry
GL4_2405 CDS
T03636
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
mcg
Methyloceanibacter caenitepidi
Brite
KEGG Orthology (KO) [BR:
mcg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mcg03016
]
GL4_2405
Enzymes [BR:
mcg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
GL4_2405
Transfer RNA biogenesis [BR:
mcg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GL4_2405
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
BAQ17841
UniProt:
A0A0A8K4Z3
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All DBs
Position
2472584..2473753
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AA seq
389 aa
AA seq
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MNLITTTEELEAACADLAKAPFIAVDTEFMREQTFWPRLCLIQIAGGDTEVLIDNLAPGI
DLKPFFDLMVDENVLKVFHSARQDIEIVHHMAGVVPHPIFDTQVAAMVCGFGEAVSYAML
VKRLLGRNLDKSSRFTDWSRRPLSERQLTYALGDVTHLRDLFPKLKAQLDKSERASWLIE
EMAVLTDPATYELHPEHAWRRLKMRIKTQKALAVLMELAAWREREAQSQDVPRSRVLKDE
ALYDIAGQAPRTVEDLGALRSLHNGFARSSRGRGVLEAVERGLARDPASVPPLQRGEPMP
PEAQAVMDLLRVLLKATAGRHGVAPKLIATSDELEQIARSNDADTAALRGWRLKLFGEDA
LALKRGELALTIRKGSVTVLAAEEPEDRS
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcatcacaaccacagaagagcttgaggcggcctgcgccgacctcgccaaggcc
ccgttcattgcggtcgacaccgaattcatgcgcgagcagaccttctggccgcgcctgtgc
ctcattcagatcgcaggcggcgacaccgaggtccttatcgacaatctggcgccgggcatc
gacttgaagccgttcttcgacctgatggtcgacgaaaacgtcctgaaggtctttcattct
gcccgccaagacattgaaatcgttcatcatatggcgggtgtggtgccccaccccatcttc
gacacgcaagtggcggcgatggtctgcggcttcggcgaggcggtcagctacgccatgctt
gtgaagcgtctgctaggccgcaatctggataagagttcgcgcttcaccgattggagccgc
cgcccgctctcggagcggcaactcacctatgccttgggcgacgtgacccatctgcgcgac
ctgtttcccaagctcaaggcacagctcgacaagtccgagcgggcgagctggctcatcgag
gagatggccgtcctgaccgaccctgccacctacgagctccatccggagcacgcttggcgg
cggctcaagatgcgcatcaagacgcaaaaggcgctcgccgttctcatggagctggcggct
tggcgcgaacgcgaggcgcaaagccaggacgtcccccgctcgcgtgttctaaaagacgag
gcgctctacgacattgccggccaggcgccgcgtacggtcgaagacctcggggccctgcga
tccttgcacaacggcttcgcccggtcctcgcgcggccgcggcgtgctggaggctgtggag
cgcggccttgcgcgcgaccctgcctcggttcctccgcttcagcgcggcgagccgatgccg
cccgaagcgcaagcggtaatggacctgttgcgtgtgctgctgaaggcgacggcgggacgt
cacggcgtcgcgcccaagctgatcgccacatcggacgaactcgagcagatcgcccggtcg
aacgacgcggacaccgccgcactgcgaggctggcggctcaagcttttcggtgaggacgcg
ctggcgctcaagcggggcgaactggccctgacgatccgcaagggatcggtgacggtgcta
gcggcggaagaaccagaagaccgctcctag
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