Methylorubrum extorquens CM4: Mchl_0010
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Entry
Mchl_0010 CDS
T00809
Name
(GenBank) helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mch
Methylorubrum extorquens CM4
Pathway
mch03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Mchl_0010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mch03400
]
Mchl_0010
Enzymes [BR:
mch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Mchl_0010
DNA repair and recombination proteins [BR:
mch03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Mchl_0010
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
SH3_13
OB_YrrC
UvrD_C_2
HHH_5
AAA_11
Viral_helicase1
NAT10_TcmA_helicase
HHH_2
AAA_29
HHH_3
AAA_22
nSTAND3
PIF1
AAA_16
UvrD-helicase
TrwB_AAD_bind
NTPase_1
DEAD
AAA_28
MeaB
AAA
HHH
IstB_IS21
CbiA
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
ACK80980
UniProt:
B7L008
LinkDB
All DBs
Position
9896..12097
Genome browser
AA seq
733 aa
AA seq
DB search
MNTPLRSSAVDGAASLDMLAGSVERVTFHSAETGFCVLKVHARGRRDLVPVVGHAPAIAA
GEWLTASGRWVTDREHGLQFRADTLQVTPPTGIEGIERYLASGQMRGIGPMMAKRIVARF
GEAVFEIIEAEPARLTEVEGIGRKRAARIVKGWAEQKAVREIMIFLHAHGVGTARATRIF
RTYGGDSLKVMAEDPYRLARDIRGIGFRTADAIALRLGLARDAPQRLAAGVSYALQTAMD
EGHCGLPAERLVRLAAELLDVAPDLVRLAAALVLREGREVVADTLRGEPCLFLKGLHGAE
RVIAMRLAERAAGPPPWAAIDFALARPWVEAKTGKTLSASQAEAVGLVLRSKLCVLTGGP
GVGKTSTLDAILRILTAKGVRVLLAAPTGRAAKRMAEQTGLEARTLHRLLEIDPRNGGFQ
RNEENPLDCDLLVIDETSMVDVPLMHALLKAVPERAGLILVGDVDQLPSVGPGQVLADVI
ASGTVPVARLTEIFRQAAQSRIVVNAHSINTGRMPAAPAKGEDSDFYLVEIEDADEGVET
LIELVTRRIPRRFGLDPTHDIQVLTPMIRGSLGSRNLNNALQRVLNPSPSAEVERFGWRF
APGDRVMETRNDYDRDVFNGDLGTISAIDAEEEALVVDFDGRAVIYPFNELDTLVPAFAT
TIHKAQGSEYPAVVIPVVTQHRTMLARNLLYTGVTRGRRLVVLIGQRRALAMAVREGASR
RRWTKLREWLDAA
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgaatacgcccctccgctcctcggccgtcgatggtgccgcgtccctcgacatgctcgcc
ggctcggtcgagcgggtgacgttccacagcgccgagaccggcttctgcgtcctcaaggtc
catgcccgcggccggcgcgacctcgtgccggtggtgggccatgcgcccgccatcgccgcc
ggcgagtggctgacggcttccgggcgatgggtcacggaccgtgagcacggcctccagttc
cgcgccgacacgctccaagtgacgccgcccacggggatcgagggcatcgagcgctacctc
gcatccgggcagatgcgcggcatcggcccgatgatggccaagcgcatcgtcgcccgcttc
ggggaggcggtgttcgagatcatcgaagccgagcccgcccgcctcaccgaggtcgagggc
atcggccgcaagcgcgccgcgcgcatcgtcaagggctgggccgagcagaaggccgtgcgg
gagatcatgatcttcctgcacgcccacggcgtcggcaccgctcgggcgacccggatcttc
cgcacctatggcggggattccctgaaggtcatggccgaggatccctatcggctcgcccgc
gacatccgcggcatcggcttccgcacggcggacgccatcgccctgcgcctcggcctcgcc
cgcgacgcgccgcagcggcttgctgccggtgtctcctacgcactccagacggcgatggat
gagggccattgcgggcttcccgccgagcggctggtgcgcctcgctgccgagcttctcgac
gtcgcgcccgatctcgtccggctcgccgcggcgctcgtcctgcgcgagggccgcgaggtc
gtcgcggatacgctgcgcggcgagccctgcctgttcctcaagggcctgcacggcgccgag
cgcgtcatcgcgatgcggctggccgagcgcgccgccggccccccaccctgggccgcgatc
gacttcgcgctggccaggccctgggtcgaggcgaagaccggaaagacgctgtccgcctcg
caggctgaggcggtcgggctggtgctccgctcgaagctctgcgttctcaccggcggcccc
ggcgtcggcaagaccagcaccctcgacgcgatcctgcgcatcctcaccgccaagggcgta
cgggtgctgctcgccgcccccaccggccgcgcggccaagcgcatggccgagcagaccggg
ctggaagcacgcacgctccatcgcctgctggagatcgacccgcgcaatggcggctttcag
cgcaacgaggaaaacccgctcgattgcgatctcctcgtcatcgacgagacctcaatggtc
gacgtgccgctgatgcatgccctcctcaaggcggtgccggagcgagcgggcctgatcctc
gtcggtgatgtcgaccagcttccctcggtcggacccggacaggtgctggccgacgtgatt
gcctccgggacggtgccggtggcgcgtctcaccgagatttttcgtcaggcggcgcagagc
cggatcgtcgtcaacgcccacagcatcaacaccgggcggatgccggctgcgcccgccaag
ggcgaagacagcgacttttacctcgtcgagatcgaggacgcggacgagggcgtggagacg
ctgatcgaactcgtcacccgccgcatcccccgccgcttcggcctcgatcccacccacgac
atccaagtgttgacgccgatgatccgcggctcgctcggcagccgcaacctcaacaacgcc
cttcagcgcgtgttgaatccgtcgccctcggcggaggtcgagcgcttcggctggcgcttt
gcgcccggcgaccgggtgatggagacccgcaacgactacgaccgcgacgtgttcaacggc
gacctcggtacgatcagcgccatcgatgcggaggaagaggcgctcgttgtcgatttcgac
ggtcgcgcggtgatctaccccttcaacgaactcgacacgctggtgccggccttcgccacg
acgatccacaaggcgcagggctcggaatatccggccgtggtgatcccggtggtgacccag
catcgtacgatgctggcgcgcaacctgctctataccggcgtcacccgcgggcgccgcctc
gttgtgctgatcggccagcgccgggcccttgcgatggcggtccgcgaaggggcctcgcgg
cggcgctggaccaagctgcgagagtggctggacgccgcctga
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