Methylorubrum extorquens CM4: Mchl_0621
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Entry
Mchl_0621 CDS
T00809
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mch
Methylorubrum extorquens CM4
Pathway
mch02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mch00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Mchl_0621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mch03021
]
Mchl_0621
Transcription machinery [BR:
mch03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Mchl_0621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
ACK81543
UniProt:
B7KY45
LinkDB
All DBs
Position
complement(615735..617735)
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AA seq
666 aa
AA seq
DB search
MATKATERDDADAAQDQPTDGPLLDLTDAAVKRMVKLAKKRGYVTYEEINEVLPDGQVDG
DQIEDVLAQLDDMGIRVVEAEESEEAAPEAKANGEASEEEESTEGGEVAETSGTRAVAVA
TPTTREPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQA
IIIWRDELVDGKVLLRDIIDLEATYAGPDARGAPQEAEAEGEESEEAEGAVPPEGADDED
DMENNVSLAAMEAEIKPRVLETFDNIASNYRKLRKLQNEETELKTGGGTVTSAQTKKQAE
LKDIVVTDVKSLSLNANRIEALVEQLYDINKRLISHEGRLMRAAEHHGVARDEFLRHYQG
YELDPNWMDRVATLGGKGWKNFVERGGRQVADLREQILTLASETGLQIGEYRKIVAMVQK
GEREARQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF
STYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKL
AMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNVVLPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKL
RSFLDN
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgaaggcaaccgagcgggacgatgcggacgccgcccaggatcaaccgacggac
ggcccgctccttgacctgacggatgccgccgtcaagcggatggtcaagctcgcgaagaag
cgcggctacgtcacctacgaagagatcaacgaggtcctcccggacggtcaggtcgacggc
gaccagatcgaggacgtgctcgcgcagctcgacgacatgggcatccgcgtggtcgaggcg
gaggaatccgaggaggctgcccccgaggccaaggccaacggcgaagcctccgaggaggag
gagagcacggagggcggagaggtcgccgagacttccggcacccgcgccgtcgcggtagcg
acccccaccacccgcgagccgaccgaccgcacggacgatcccgtgcggatgtacctgcgc
gagatgggctcggtggagctgctctcgcgtgagggcgaaatcgcgatcgccaagcgcatc
gaggccggccgcgaggcgatgatcgcaggtctctgcgagagcccgctgaccttccaggcc
atcatcatctggcgcgacgaactcgtcgacggcaaggtgctgctgcgcgacatcatcgat
ctcgaagccacctatgccggccccgatgcccgcggcgcgccgcaggaagcggaagccgag
ggtgaagagtcggaggaggccgaaggcgccgtcccgccggaaggcgccgacgacgaagac
gacatggagaacaacgtgtcgcttgcggccatggaggccgagatcaagccgcgggttctc
gaaaccttcgacaacatcgcctcgaactaccgcaagctgcgcaagctccagaacgaggag
acggagctgaagacgggcggcggcaccgtcacctccgcgcagaccaagaagcaggccgag
ctgaaggacatcgtcgtcaccgacgtgaagtcgctctcgctcaacgccaaccgcatcgag
gccctggtcgagcagctctacgacatcaacaagcgcctcatctcgcatgagggccgcctg
atgcgcgccgccgagcaccacggcgtcgcccgcgacgagttcctgcgccactaccagggc
tacgagctcgacccgaactggatggaccgcgtcgccacgctgggcggcaagggctggaag
aacttcgtcgagcgcggcggccgtcaggtcgcggacctgcgcgagcagatcctgacgctc
gcctccgagaccggcctgcagatcggcgagtaccgcaagatcgtcgccatggtgcagaag
ggcgagcgcgaggcccgccaggcgaagaaggagatgatcgaggccaacctccgcctcgtg
atctcgatcgccaagaagtacaccaaccgcggcctgcagttcctggacctgatccaggag
ggcaatatcggcctgatgaaggcggtcgataagttcgagtatcgccgcggctacaagttc
tcgacctacgctacgtggtggatccggcaggcgatcacccgctcgatcgccgaccaggcg
cgcacgatccgcattccggtgcacatgatcgagacgatcaacaagatcgtccgcacgtca
cgccagatgctgcacgagatcggccgcgagccgactccggaggagctggccgagaaattg
gccatgccgctggagaaggtgcgcaaggtcctgaagatcgccaaggagccgatctccctc
gaaacgccgatcggcgacgaggaggattcgcatctcggcgacttcattgaggacaagaac
gtcgtcctgccgatcgacgcggcgattcagtcgaacctgcgcgagaccacgacccgtgtg
ctcgcctcgctgacgccgcgcgaggagcgcgtgctgcgcatgcgcttcggcatcggcatg
aacaccgaccacactctcgaagaggtgggtcagcagttctcggtgacccgcgagcgcatc
cgccagatcgaagcgaaggccctgcgcaagctcaagcatccgagccggtcgcggaagctg
cgaagcttcctcgacaactga
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