Methylorubrum extorquens CM4: Mchl_2657
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Entry
Mchl_2657 CDS
T00809
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mch
Methylorubrum extorquens CM4
Pathway
mch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mchl_2657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mch03019
]
Mchl_2657
03016 Transfer RNA biogenesis [BR:
mch03016
]
Mchl_2657
Enzymes [BR:
mch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Mchl_2657
Messenger RNA biogenesis [BR:
mch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mchl_2657
Transfer RNA biogenesis [BR:
mch03016
]
Prokaryotic type
tRNA degradation factors
Mchl_2657
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
FaeA
Motif
Other DBs
NCBI-ProteinID:
ACK83497
UniProt:
B7KNQ8
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All DBs
Position
2791950..2794316
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AA seq
788 aa
AA seq
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MARRINPTAGTPVLPSREQILAFVAETPGKVGKREIAKAFGISGADKIGLKAILKEIEAE
GALERDRGGLRKGGSLPPVVLADIVSRDRDGDLIARPAQWDGEGEAPKIAVETPRAGRKG
NRPAPGIGDRALVRVAPDPEAPGRYSGRVIKVIGKNRSEVIGVYRAGRDGGRLLPVEKKS
QGKEIAIPPGEEGEARDGDLVSVAVERETRFGLPRGRVTERLGALGSEKAVSLIALHIHN
IPHVFPAAVLAEADAAKRATKRGREDWREAPLVTIDPPDAKDHDDAVMAEADPDPANAGG
FILTVAIADVAAYIRPDSALDREALLRGNSVYFPDRVVPMLPERISNDLCSLREGEDRPA
LAVRMIIGADGVKRSHSFHRILMRSHAKLAYAQAQAAIDGRPDEKSRPVLETALRPLYAA
YEAMKRARDARGPLALDLPERKVLLDAEGGVDRVIVPERLEAHRLIEEFMIQANVAAAET
LEKAGSPLIYRVHDEPALEKMRALGEVLASVGVKMTKAGALRPDLFNRILAQVAESEHAP
FINEVVLRSQAQAIYAAQNLGHFGLNLRRYAHFTSPIRRYADLIVHRALVRACGLGKDGL
PDDTTPGMLDAVSEQISAAERRAMAAERETIDRLIAGYLADRVGATFTGRISGVTRSGLF
VKLAETGADGFVPVSTIGHEYYRHDEALHALVGDRSGETYRLGDTVEVRLVEAAAVAGAL
RFEILSEGRSRSGAKGGGFKRSGSKASPGKAKLGKAKFGAKSPKGKPRPGKTAASESDAA
RRHRGSRR
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
ttggccagacgcatcaatccgacggcgggcacccccgttctcccctcccgcgagcagatc
ctcgccttcgtcgccgagacgcccggaaaggtcggtaagcgcgaaatcgccaaggccttc
ggcatctccggcgccgacaagatcggcctcaaggcgatcctgaaggagatcgaggccgag
ggcgcgctcgagcgcgaccgcggcggtttgcggaaaggcggcagcctgccgccggtcgtg
ctcgccgacatcgtgtcgcgcgatcgcgacggcgacctgatcgcccgcccggcgcagtgg
gacggggagggcgaggcgcccaagatcgccgtcgagaccccgcgtgccggccgcaagggc
aaccgccccgcccccggcatcggcgaccgggcgctggtccgcgtcgcacccgacccggaa
gcgcccggccgctacagcggccgcgtcatcaaggtgatcggcaagaaccgctccgaagtg
atcggcgtctatcgcgccggccgcgacggcgggcgcctgcttcctgtcgagaagaaatcg
cagggtaaggaaatcgcgatcccgccgggcgaggagggcgaggcccgggatggcgacctc
gtcagcgtcgcggtggagcgcgagacccgcttcggcctgccccgcgggcgcgtcaccgag
cggctcggcgcgctcggctccgagaaggcggtgagcctgatcgcgctgcacatccacaat
atcccgcacgtcttccccgccgccgtgctggcggaggcagacgcggccaagcgcgcgacc
aagcgcggccgcgaggattggcgcgaggcgccgctggtcaccatcgacccgcccgacgcc
aaggaccacgacgacgcggtgatggctgaggccgatcccgatccggccaatgcgggcggc
ttcatcctcaccgtcgcgatcgcggatgtggccgcctatatccggccggattcagccctc
gaccgcgaggcgctgctgcggggcaactcggtctacttccccgaccgggtggtaccgatg
ctgcccgagcgcatttcgaacgatctctgctcgctgcgcgaaggggaggaccgcccggcg
ctcgccgtgcggatgatcatcggcgccgacggggtgaagcgcagccacagcttccaccgc
atcctgatgcgctcgcacgccaagctcgcctatgcgcaggcgcaggccgcgatcgacggc
cggccggacgagaaatcgcgaccggtgctggagaccgcgctccgcccgctctacgcggcc
tacgaggcgatgaagcgggcccgcgatgcccgcggcccgctcgccctcgatctgccggag
cgcaaggtgctgctcgacgcggagggcggcgtcgatcgggtgatcgtgccggagcgtctg
gaggcgcatcggctgatcgaggagttcatgatccaggccaacgtcgcggcggccgagacc
ctcgagaaggcgggctcgccgctgatttaccgggttcacgatgagccggccctggagaag
atgcgcgcgctcggcgaggtgctcgcctcggtcggcgtcaagatgaccaaggccggggcg
ctgcggccggacctgttcaatcgcatcctcgcccaggtggccgagagtgagcacgctccg
ttcatcaacgaagtcgtgctgcgttcgcaggcacaggcgatctacgctgcacagaattta
ggccatttcggcctcaacctgcgccgctacgcccacttcacctcgcctatccgccgctac
gcggatctcatcgtccaccgtgctctcgtgcgtgcctgcggattgggcaaggatggcctg
ccggacgacactacgccgggtatgctcgacgcggtctccgagcagatctcggcggccgag
cgccgggcgatggcggccgagcgcgagaccatcgaccggctcatcgccggctacctcgcc
gaccgggtcggcgcgactttcaccggccggatctccggggtgacgcgctcggggctgttc
gtgaagctcgccgagaccggggccgacgggttcgtgcccgtctccaccatcggccacgaa
tattaccgccacgacgaggccctgcacgcgctcgtcggcgaccgcagcggcgagacctac
cgcctcggcgacacggtcgaggtccgcctcgtcgaggcggcggcggtggccggcgctctg
cgcttcgagattctttcggaggggcgcagccgttccggcgccaaaggcggcgggttcaag
cgcagcgggtccaaggcgagtccgggcaaggcgaagttgggcaaggccaagttcggtgca
aagtcgcccaagggcaagccgcgccccggcaagacggcggcgtccgagagcgatgcggcg
cggcgccatcgcggctcgcgtcgctga
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