Methylorubrum extorquens CM4: Mchl_2794
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Entry
Mchl_2794 CDS
T00809
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mch
Methylorubrum extorquens CM4
Pathway
mch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mchl_2794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mch03019
]
Mchl_2794
Enzymes [BR:
mch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mchl_2794
Messenger RNA biogenesis [BR:
mch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mchl_2794
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ACK83633
UniProt:
B7KPP7
LinkDB
All DBs
Position
2948216..2949748
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AA seq
510 aa
AA seq
DB search
MTQFTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPI
LHRLSLDSRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQER
AIAPGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAK
RQSLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVL
RDPKIERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVLV
ATDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDI
ERTTRQKIPVGGFPEGFVPPSRQEAQDNAAEEARRPPRQPQGRPGQRQGRPGGGRGQGGE
GRGEPRAHEARGGRPGGQPGHRQDQRAAGAPRPDGQRQDQRRPERAGEARPQGARPQGAR
PSDGRRDGRPARSGGEGGRAIGWLDRAPRT
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
ttgacccaatttaccgatttcggcctcgctcagcccgtgctccgcgcgctggaagaggcc
ggctatgtcacgccgacgccgatccaggcgcaggccgtcccgcccgcgatggaaggccgc
gacctctgcggcatcgctcagaccggcaccggcaagaccgccgctttcgccctgccgatc
ctgcatcgcctgtcgctcgacagccgccgtgcgccgcgccgcggttgccgcgtgctcgtg
ctgtcgccgacccgcgagctcgcgagccagatcgccgacagcttctcggactatggccgg
cacctgccctacaccaacaccgtcgtcttcggcggtgtgaacatcactcgccaggagcgg
gcgatcgcgccgggcgtcgacatcctcgtcgccacgccgggccggctcatcgacctcgtc
gatcgccgcgcgctgacgctggagggcgtcgagatcctcgtcctcgacgaggccgaccag
atgctcgacctcggcttcatccacgcgctcaagcgcatcgtgaagatgctgccggccaag
cgccagagcctgttcttctcggccaccatgccgaagaacatcgctgggcttgccgaccag
tatctcagcaacccggtgcaggtggcggtcacgcccgtggcgaccaccgccgagcgcgtc
gatcagcaggtcatcttctgccataccggcgccaagcaggccctgctcaaccacgtcctg
cgtgacccgaagatcgagcgcgtgctcgtcttcacccgcaccaagcacggtgcggaccgg
gtcgtgcgcggcctcgacaaggccagcgtcgtcagcgcggcgatccatggcaacaagagc
cagccgcagcgcgagcgggcgctcgccgccttccgcgacggttcctgccgcgtgctggtg
gcgaccgacatcgccgcccgcggtatcgatgtcgacggcgtgacccacgtcgtgaactac
gatctgccgaacgtgccggaatcctacgtccaccgcatcggccgtacggcgcgtgcgggt
gcggaaggtcaggcgatctcgttctgcaacgacgaggagcgcgcttacctgcgcgacatc
gagcgcaccacgcgccagaaaattcccgtcggcgggttccccgagggctttgtgccgccg
tcgcgccaggaagcgcaggacaacgccgctgaggaggcgcgtcgtccgccgcgtcagccg
cagggtcgccccggccagcgccagggtcgtccgggcggcggtcgcggccagggtggcgag
ggacgcggcgagccgcgcgcccacgaagcccgcggcgggcgtcccggtggacagccgggt
caccgtcaggaccagcgcgccgccggcgcaccgcgccccgacggtcagcggcaggaccag
cgccgtcccgagcgggccggcgaggcgcgtccgcagggtgcgcgtccgcaaggagcccgt
ccgagcgacggccgtcgcgatggtcggcccgcgcgctccggtggcgagggcggccgggcg
atcggttggctcgaccgcgcaccgcgcacctga
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