Methylorubrum extorquens CM4: Mchl_3141
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Entry
Mchl_3141 CDS
T00809
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
mch
Methylorubrum extorquens CM4
Brite
KEGG Orthology (KO) [BR:
mch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mch03016
]
Mchl_3141
Enzymes [BR:
mch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Mchl_3141
Transfer RNA biogenesis [BR:
mch03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Mchl_3141
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
ACK83979
UniProt:
B7KS94
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All DBs
Position
complement(3316877..3318031)
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AA seq
384 aa
AA seq
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MELISATQALSDACTQFAAQPFVTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKD
LDLKPFFDLMADESTVKVFHSARQDLEIIWLLGGLLPQPFFDTQVAAMVCGYGDSVSYEQ
LVNDVAKARIDKSSRFTDWSRRPLSEAQLAYALSDVTHLVTIYQVLAAELLSTDRGLWLD
EEMAVLTSPETYQAEPAQAWRRLSGRMRKPREIAVLMEVAAWREAEAQSRNVPRGRILKD
EAVIDIATAGPRSVEALGRLRTIPAGFERSRTGTEILAAVERGFARDPSQIAVPERSRSR
GGGNGALIDLLKVLLKAVAEAEGVAPKIIATVDDLEALAEDDAADVAVLQGWRRSLFGDK
ALALKHGRMALSVERGRVTVRELP
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atggaactgatctccgcaacgcaggctctgtccgacgcctgcacccaattcgccgcgcag
ccgttcgtgaccgtcgatacggagttcatgcgcgagacgacctactatccgaagctctgc
ctgattcagatggctgggcccgacggattcgcctgcctcgtcgatccgctcgcaaaagat
ctcgatctcaagccgttcttcgacctgatggccgatgagagcaccgtgaaggtgttccat
tcggcccggcaggatctggagatcatctggctgctcggcgggctgctgccgcagccgttc
ttcgacacgcaggtcgcggccatggtctgcggctacggcgactcggtctcctacgagcag
ctggtcaacgatgtcgccaaggcgcgcatcgacaaatcctcccgcttcaccgattggtcg
cggcgccccctgtccgaggcgcagctcgcctacgccctgtcggacgtcacccatctcgtg
acgatctatcaggtgctcgcggccgaactgctgagcaccgaccgcggcctctggctcgac
gaggagatggcggtcctcacctcgccggagacctatcaggccgagcccgcccaggcctgg
cgccggctctcggggcggatgcgcaagccgcgcgagattgccgtgctgatggaagtggcc
gcgtggcgcgaggcggaggcccagagccgcaacgtcccccgcgggcgcatcctcaaggac
gaggcggtgatcgacatcgccaccgccggcccccgcagcgtcgaggccctggggcgcctg
cgcaccatcccggccggcttcgagcgctcgcgcaccggcaccgaaatcctcgcggcggtc
gagcggggctttgcccgcgacccctcgcagatcgccgtgcccgagcgcagccgctcccgc
ggtggcggcaacggcgcgctcatcgatcttctcaaggtgctgctcaaggcggtggccgag
gccgagggcgtggcgcccaagatcatcgccaccgtcgatgacctcgaagcactcgccgag
gacgacgccgcggatgtggccgtgctccagggttggcgccgctccctgttcggcgacaag
gctctggcactcaagcacgggcgcatggcgctttcggtcgagcgtggccgggtcaccgtg
cgcgaactgccttag
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