Methylorubrum extorquens CM4: Mchl_3952
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Entry
Mchl_3952 CDS
T00809
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mch
Methylorubrum extorquens CM4
Pathway
mch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mchl_3952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mch03019
]
Mchl_3952
03009 Ribosome biogenesis [BR:
mch03009
]
Mchl_3952
Enzymes [BR:
mch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Mchl_3952
Messenger RNA biogenesis [BR:
mch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mchl_3952
Ribosome biogenesis [BR:
mch03009
]
Prokaryotic type
rRNA processing factors
Mchl_3952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACK84763
UniProt:
B7KYL2
LinkDB
All DBs
Position
complement(4151377..4154517)
Genome browser
AA seq
1046 aa
AA seq
DB search
MANNKMLIDAMHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFV
EYGGNRHGFLAFNEIHPDYYQIPMADRLALIEAEAREEEEHREREERRPPRGRRSRGRRA
EARGSRPDDTVKSQEAVSDAGSEDAAIPGEGQAADAPAPEAIEAVRSALVEGRIEERNDE
RSEGDAASAPVEAGGDASASLPEAALEPGTPTGEAPADEAAAVEPSDIAAISEAPNPPVE
AAESSESAPVEAASAEAETVEPQPVAASAPVSQAEIEEADADSDEDAETDDSDDEDSEDD
ESDDEDEDDDSEDDDSDDEDDDEESEDGEPRVAQVGGSGDALAELPERPRAYRRHYKIQE
VIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITSAADRKRL
KEVVADLDVPDGMGIILRTAGASRTKPEIKRDFEYLMRLWESVRELTLSSTAPALVYEEG
SLIKRAIRDLYNKDLDEVLVSGEDAYREAKDFMRMLMPGQSKVVKPYRDPTPIFARYGVE
QQLDAMFSTHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTALKTNLEAAEEVAR
QVRLRDLAGLVVIDFIDMEEKRNNRAVEKRLNEALKNDRARIQVGRISPFGLLEMSRQRI
RTGVLESSSIPCAHCGGSGFVRATSSVALHILRSIEEVLLKSASHNVVLRTRTETALYIL
NQKRAHLFDLEQRFSVTITISADDRLVATSAFQLERGEPAVKHEGPVTGVRAVAISPVYE
AEEFEDEAVESQETEEVETEVEAEAEGASEERPAADASEEGGGRRRRRRRRRGGRASGEG
EARARDEDGTDSEDGAEDGTEDGDDAPDSEPEAAEAALGAAAEPDETASDADANGEDANG
RRRRRGRRGGRGRGRTERNGRSDSEQNSDADEVRTSEESEAHPEETASDTLPVGPEEPFN
DADVSTVSLAAENGAAAEPPPVVPAPELEPIQVESFAEAATEAAAPSPANAEPAPEPVAV
VLTPPDPNRPKRAGWWSRTKAALSGE
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaacaagatgctcatcgatgcgatgcatccggaggagacccgggtcgtcaca
gtccaaggctcgcgggtcgaggaatttgatttcgaggcggccaaccgccggcctctgagg
ggcaacatctatctcgccaaggtcacccgcgtggagccctcgctccaggcggccttcgtc
gagtacggcggcaaccgccacggcttcctcgccttcaacgagatccaccccgactactac
cagatcccgatggccgatcgcctcgcgctgatcgaggccgaggcgcgcgaggaagaggag
caccgcgagcgcgaggagcgccgtccgccgcggggccgccgctcgcgcgggcgccgggcc
gaggcccgcggttcgcgccccgacgacacggtgaagtcgcaagaggcggtgtccgacgca
ggctccgaggacgctgcgatccccggtgagggccaggccgccgacgcgcccgcgccggag
gcgatcgaggcggtgcggtccgctctcgtcgaaggacggatcgaagaacggaacgacgag
cggagcgagggcgacgcggcgtccgcaccggtcgaggccggcggcgatgcctccgcgagc
ctgcccgaggcggcgctggagcccggcacccccaccggcgaggcgccggctgacgaagcc
gccgcggtcgagccctccgacatcgccgcgatctccgaggcgccgaacccgcccgtcgag
gccgcggaatcctccgagtccgcgcccgtcgaggctgcttccgccgaggcagagacggtc
gagccgcagcccgtcgccgccagcgcgccggtctcccaggccgagatcgaggaagccgac
gcggattccgacgaggacgccgagaccgacgattcggacgacgaggactcggaggatgac
gagtccgacgacgaggatgaggacgacgattccgaggacgacgattcggacgacgaggac
gacgacgaggaatccgaggacggcgagccgcgcgtcgcgcaggtcggtggctcgggcgat
gcgctcgccgagctccccgagcgtccgcgcgcctatcgccgccactacaagatccaggag
gtgatcaagcgccgccagatcatcctcgtccaggtcgtcaaggaagagcgcggcaccaag
ggcgcggcgctcaccacctacctgtcgctggccggccgctactcggtgctgatgcccaac
accggacggggcggcggcatctcgcgcaagatcacctcggccgccgaccgcaagcgcctc
aaggaagtggtcgccgacctcgacgtgccggacgggatggggatcatcctgcgcacggcc
ggcgcctcgcgcaccaagcccgagatcaagcgcgacttcgagtacctgatgcgcctgtgg
gagagcgtgcgcgagctgacgctgtcctcgaccgccccggcgctcgtctacgaggagggc
tcgctgatcaagcgggcgatccgcgacctctacaacaaggatctcgacgaggttctggtc
tccggcgaagacgcctatcgcgaggccaaggacttcatgcggatgctgatgcccggccag
tccaaggtcgtgaagccctaccgcgatccgacgccgatcttcgcccgctacggcgtcgag
cagcagctcgacgcgatgttctcgacccacgtcgcgctgcgctccggcggctacctcgtc
atcaacccgaccgaggcgctggtctcgatcgacgtgaactcgggccgcgcgacccgcgag
cacgacatcgaggacaccgcgctcaagacgaacctcgaggcggccgaagaggttgcccgg
caggtgcgcctgcgcgatctcgccggcctcgtcgtgatcgacttcatcgacatggaggag
aagcgcaacaaccgggcggtggagaagcgcctgaacgaggcgctcaagaacgaccgggcg
cgcatccaggtcgggcggatctcgcccttcggcctgcttgagatgagccgccagcgcatc
cgcaccggcgtgctcgaatcctcctcgatcccctgcgcccattgcggcggctcgggcttc
gtgcgggcgacctcctcggtggcgctgcacatcctgcgctcgatcgaggaggtgctgctc
aagtcggcgagccacaacgtcgtgctgcgcacccgcaccgagacggcgctctacatcctc
aaccagaagcgggcgcatctcttcgatctcgagcagcgcttctcggtcacgatcaccatt
tccgccgacgaccggctcgtggcgacctccgccttccagctcgaacgcggtgagccggcg
gtgaagcacgagggcccggtgacgggcgtgcgcgccgtggcgatctcgccggtctacgag
gccgaggagttcgaggacgaggcggtcgagagccaggagaccgaagaggtcgagaccgag
gtcgaagcggaggccgagggcgcgtccgaggagcgccccgccgccgatgcgtccgaggag
ggcggtggccgtcgccgccgtcgccgtcgccgtcgcggtggccgcgcctccggtgagggc
gaggcccgcgcgcgtgacgaggacgggaccgacagcgaggacggggccgaggacggcacg
gaggacggcgacgatgcgcccgattccgagccggaggccgccgaggcggctctcggcgcc
gcggccgagccggacgagaccgcatcggacgccgacgccaacggcgaggacgccaacgga
cgccgccgtcgccgcggacgccggggcggtcgcggccgcggccggaccgagcgcaatggc
cgttcggattccgagcagaattccgatgccgacgaggtgcggacctcggaggagtccgaa
gcgcatcccgaggagaccgcctccgataccctgccggtcggccccgaggagccgttcaac
gatgccgatgtgagcaccgtctcgctcgccgccgagaacggcgccgcggccgagccgccg
ccggtcgtccccgcgccggagctcgagccgatccaggtcgagtccttcgccgaggccgcg
accgaagcggcagcgcccagcccggccaacgctgagcccgcgccggagcccgtcgcggtg
gtgctgacgccgccggacccgaaccgtcccaagcgggccggctggtggtcgcgcaccaag
gcggcgctgtcgggggagtga
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