Methylorubrum extorquens CM4: Mchl_4400
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Entry
Mchl_4400 CDS
T00809
Name
(GenBank) exodeoxyribonuclease III Xth
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
mch
Methylorubrum extorquens CM4
Pathway
mch03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Mchl_4400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mch03400
]
Mchl_4400
Enzymes [BR:
mch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
Mchl_4400
DNA repair and recombination proteins [BR:
mch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Mchl_4400
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
ACK85176
UniProt:
B7KN59
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All DBs
Position
complement(4651446..4652255)
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AA seq
269 aa
AA seq
DB search
MRLTVTTWNINSVRLRIESVLRFLREAQPDVLCLQETKCPDDLFPLKAFKGSGYENIVFA
GQKGYNGVAIISRFPLLTRDVMSFCERPDARHISAVLGPEAGPAAGIVLHDFYVPAGGDM
PHRDLNPKFAHKLDFLSELRGWGGRRVSGPAILVGDLNVAPLEHDVWSHKQLLDVVSHTP
VETEALETLRGEAGWIDAARLLTPEPEKIYTWWSYRSPNWELANKGRRLDHTWVSPDLAG
TVRRVAVFREARGWERPSDHVPVTLTLEL
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcctcaccgtcacgacctggaacatcaactcggtgcgtctgcgcatcgagtccgtg
ctgcgcttcctccgcgaggcgcagccggacgtgctgtgcctgcaggagaccaagtgcccc
gacgacctgttcccgctcaaggcgttcaagggatcgggctacgaaaacatcgtcttcgcc
gggcagaagggctataacggcgtcgcgatcatctcgcgctttccgctgctgacccgcgac
gtgatgagcttctgcgagcggcccgacgcgcgccacatctcggcggtgctcgggcccgag
gcgggaccggcggcggggatcgtgctgcacgatttctacgtgccggcgggcggcgacatg
ccccaccgcgacctcaacccgaaattcgcgcacaagctcgacttcctgtccgaattgcgg
ggctggggcggacggcgggtctccgggccggcgatcctggtgggggacctcaacgtcgcg
ccgctggagcacgacgtctggtcgcacaagcagctcctcgacgtggtgagccacaccccc
gtcgagaccgaagcgctcgagacgctgcggggcgaggccggctggatcgacgcggcgcgg
ctcctcaccccggagccggaaaagatctacacgtggtggagctaccgctcgccgaactgg
gaactcgccaacaagggccggcgcctcgaccatacctgggtttcgcccgatctcgccggc
accgtgcgccgggtcgcggtgttccgcgaggcgcgcggctgggagaggccgtccgatcac
gtcccggtgacgttgacgttggagctctga
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