Momordica charantia (bitter melon): 111004686
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Entry
111004686 CDS
T05045
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03420
Nucleotide excision repair
mcha04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
111004686
09124 Replication and repair
03420 Nucleotide excision repair
111004686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mcha04121
]
111004686
03400 DNA repair and recombination proteins [BR:
mcha03400
]
111004686
Ubiquitin system [BR:
mcha04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
111004686
DNA repair and recombination proteins [BR:
mcha03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
111004686
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_WDHD1_1st
WD40_Prp19
WD40
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
EIF3I
WDR55
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EML
ANAPC4_WD40
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_SPT8
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_Nup120_160
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
111004686
NCBI-ProteinID:
XP_022131507
UniProt:
A0A6J1BR73
LinkDB
All DBs
Position
Unknown
AA seq
472 aa
AA seq
DB search
MWKNIRDREAGKLRPNSFANRLKSDRISTLQLSNHKDIVSPHRGSVNSLQVDLTERRYLL
SGASDASAAVFDIQRATHSEGLIAKHQCIFAVDKQHEQGHKYAISSAIWYPIDTGLFVTG
SYDHHINVWDTNTTQVVVNFKLPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDISSGAF
SHTLSGHRDGVMSVEWSASSEWVLVTGGCDGAIRFWDIRRAGCFRVLDQFQSQLGRRPPI
SATNKLSTSKSLSASQGSNMKSRMPHKKLANGNATKPSSIGKLPAKGSTRQRLHPGLFSS
QDRSIAHFGAVSGLKVTEDGMYLLSAGSDSRLRLWDVESGCNTLVNYETGRLQINKPLQL
ATSQDSALVFAPCMTTVKAFDMWTGKTSLTFSGHYEGVNCCWYSFTDQELYTGGNDRQIL
VWSPSRNSTELWTRRIGNPRQTRITGATDRRRQAGSSVSMLMPSLKLCSPCT
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgtggaagaatattagagatagagaagcgggaaaactccgcccaaattctttcgcaaat
cgtcttaaatccgatcgaatcagcactctgcaactttccaatcacaaggacattgtctct
ccccatagaggttccgtcaactcacttcaggttgatttgacagagcggagatatttgtta
tctggagcatcagatgcatctgctgctgtctttgatattcaacgtgcaactcattctgag
ggtcttattgcaaagcaccaatgcatttttgcagttgataagcagcatgaacagggacat
aaatatgcaatatcctcggccatatggtatcccatcgataccgggttgtttgtcactggg
tcatatgatcatcacattaatgtctgggatacaaatacaactcaggtggtcgtgaatttt
aaattgcccggaaaagtctataggacggccatgtcctctttggcaacatcacacatgctc
attgctgctggaacagaagatgttcaagttcgcctttgtgatatttcctcgggggcattt
tctcacacattatctggacatcgtgatggtgtaatgagtgtagaatggtcagcttctagt
gaatgggttttggttactggcggatgtgatggagcaatacgtttttgggacattagacga
gctggatgttttcgcgttctggatcagtttcagtcccagcttgggaggcgtccacctatt
tctgcaacaaataagctatcaacatccaagtccctctcggccagccaaggatcaaatatg
aaatctcgcatgcctcataagaaactagccaatggaaatgcaacaaagccatcatctata
ggtaaactgccagctaagggatccacaaggcaaaggctacacccaggacttttctccagt
caggatcgatctattgctcactttggtgctgttagtggattaaaagtgactgaagatggc
atgtaccttctcagtgcaggttctgattcaaggttaaggttgtgggatgttgaatctggg
tgcaatactcttgtaaactatgaaacgggccggttacaaatcaataagccattgcaatta
gctacatctcaagattcagcccttgtatttgctccgtgcatgacaactgttaaagcattt
gatatgtggacagggaagacatccctgacattcagcggccattatgaaggcgtgaactgt
tgctggtatagtttcacagatcaggaactgtacaccggtggcaacgataggcaaattctt
gtctggtctccatcccggaactctaccgaactgtggacacgcaggattgggaatccacgg
caaacaaggataactggagcgactgatcgtcgtcgacaggcgggaagttcagtctcaatg
ctgatgccatccttgaaactctgctcgccatgtacataa
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