Momordica charantia (bitter melon): 111006232
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Entry
111006232 CDS
T05045
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03013
Nucleocytoplasmic transport
mcha03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111006232
03015 mRNA surveillance pathway
111006232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcha03019
]
111006232
Messenger RNA biogenesis [BR:
mcha03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111006232
mRNA cycle factors
P-body specific factors
111006232
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
111006232
NCBI-ProteinID:
XP_022133716
UniProt:
A0A6J1BVY0
LinkDB
All DBs
Position
Unknown
AA seq
1192 aa
AA seq
DB search
MDHHEDDGRLGGESQPKRDDEETVARQEEIKKSFEAKIALRQSNLNPERPDSGFLRTLDS
SIKRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDAKLRASDIQAAVQIC
SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVIED
CAIFNNIIKDLTSIEHLRDRDATLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT
ADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENAKILNAKGELNDENVSSYEKLRKS
YDHLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA
FYECLPDLRAFVPAVLLGEAEPKANDQSTKPAENMAESEADQGQQTSLEAVEISTDCSLQ
DGKINEKGKDKEEKDKEKSKDTDKEKGKEKDADRKMENEKEKLKNVEGTNLDALLQRLPG
CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSV
ILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKISSAGLVFSCLKSCLDDFTHH
NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP
ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK
YGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN
YELVESSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSSKRK
LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV
SSSDKPNTEKHLDAEKTPSRTTSNTTSANGRDTVNGSRENGAAAHEDVADSDSDTGSGTI
EAEGRDDEESDLENHEDGDSEDDEDDEEGGGPASDEDDEVHVRQKVAEVDPREEANFEQE
LRAVMQESMDQRRQEIRGRPTLNMMIPMNLFEGTRDHHGRGVGGESGDEALDEDAGGTKE
VQVKVLVKRGNKQQTKKMFIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDREEEELN
GLGSQTMNWMQTGGNRVPTRGNNWEGSGGRSGGPRHPHHRYIGGGVHYSRKK
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggaccatcatgaagatgatggccgcctggggggtgaaagtcaacccaagagagatgat
gaggaaactgttgctcgtcaggaagaaattaaaaaatcctttgaggctaaaatagctctt
cgtcaaagtaatttgaatcccgagaggcctgactctggattccttagaactttggattct
agtattaaacgcaacacaacaattattaaaaaattaaagcagataaatgaagaacaacga
gaagggctgatggatgagttgcgaaatgtaaatatgagcaaatttgttagtgaggccgtt
gctgctatttgtgatgctaagcttagagcttctgatattcaagcagctgttcagatctgt
tctcttcttcaccaaaggtacaaagacttctcaccatgcttgattcaaggactcttgaaa
gtattttttcctggaaagtctggggacgagttggatgctgataggaacttgaaggccatg
aagaagcgcagcactctcaaacttcttttggaacttttttttgttggagttatagaagac
tgtgcaattttcaataatattattaaggatcttacgagtattgaacatttgagggatcgt
gatgctactctaacaaatttgacactccttgctagctttgctcggcaagggagaatcctc
ttggggctaccgcctacaggacaagatcatgaagagttttttaagagcctcaatattact
gccgaccaaaagaaattcttcagaaaggtgttccatacatattatgatgctgcgtctgaa
ttgcttcagtctgaacatacgtcacttcgccaaatggagcatgaaaatgcgaagatcttg
aatgcaaaaggggaactcaatgatgaaaatgtctcttcatatgaaaagttgcgaaaatct
tatgaccatttatatcgaaatgtctcatccttagcagaagcacttgatatgcaaccccca
gtgatgccagaggatggccacacaaccagggtctctgcaggagaagatgtttcatcacct
gctgctggaaaagattcttctgtgctcgaagccatatgggatgatgaagacactcgggcc
ttctatgaatgcttaccagatctcagagcctttgttccggcggtactgttgggagaagcg
gagcctaaagcaaatgatcaatctacaaagccggcagaaaatatggctgaatctgaagcc
gaccaaggtcagcagacttccctagaggcagttgagatttctactgactgttcgctacag
gatggcaaaattaatgaaaaagggaaagacaaggaagaaaaagataaagaaaagagtaag
gatacagacaaggagaaggggaaagaaaaagatgcagatagaaagatggaaaatgaaaaa
gagaaacttaaaaatgttgaaggaacaaatttggatgctttgttacagagactccctggt
tgcgtcagccgtgacctgattgatcagttgactgtagagttctgttatttgaattccaag
gctaatcgaaagaagcttgtaagggctttgtttaacgtacctaggacatctctggagttg
ctgccgtactactcacgcatggttgcgacattgtcaacttgtatgaaggatgtatctgtc
attctcctccagatgttagaggaggagttcaattttttattgaacaaaaaggaccaaatg
aacattgaaacgaagattagaaatattaggtttattggagagctctgcaagttcaaaatt
tcttcagctggccttgtttttagctgtttgaagtcgtgtttagatgatttcactcaccac
aacattgatgtcgcttgtaatcttcttgagacttgtggacgttttctttatcgatctcct
gaaactacagtgcggatggctaacatgttggagatattgatgcgtttgaaaaatgtaaaa
aatttggatccccgacatagcaccctggtagaaaatgcatactatctttgcaagccacca
gagagatctgcacgagtgtcaaaagttcgtccaccattgcatcagtatattagaaagttg
ctcttctcagatctagacaagtctgccattgagaacgtgttgaggcaacttcggaaactt
ccatggagtgaatgtgaacaataccttttaaaatgttttatgaaagttcacaaagggaag
tatggccagattcacttgattgcttctctcacatctggtttgagtcgatatcatgatgaa
ttctcggttgctgttgttgacgaggtcttggaagaaattaggcttggacttgaagtaaat
gattatgggatgcaacaaaaacgcattgcgcatatgcggtttttgggggagttgtacaac
tatgaacttgtagagtcatctgttgtttttgatacgctctatttgattcttgtctttggc
catggcacatcagagcaagatgtactggatccacccgaggacactttccgcatacggatg
attatcactcttcttcaaacctgtggtcactactttgatcgaggatcttcaaagaggaaa
cttgatcggttttttatacacttccagaaatatattctcagcaaaggcgcacttccattg
gatgttgagttcgacttacaggatttatttgcggaattgcaaccaaacatgactagatac
tcatccattgaagaaataaatgctgcttttgtagaacttgacgagcatgagcgttctgtc
tcatcaagtgataagcccaataccgagaaacaccttgatgctgaaaaaactcccagcaga
actacttccaataccacctcagctaacggaagggacacggtcaatggctctagggaaaat
ggtgcagcagctcatgaagacgttgccgatagtgacagtgatacaggaagtggcactatt
gaggcagagggacgtgatgatgaagagtcggacttggagaatcatgaagatggtgacagc
gaggatgatgaagacgacgaagaagggggtgggcctgcttcggatgaggatgatgaggtt
catgttagacagaaagtggctgaggtagacccccgagaagaagccaacttcgagcaggag
ctgagggctgtaatgcaggagagtatggatcagcgcaggcaagagatacgtggccgaccg
acattgaatatgatgataccgatgaatttgtttgagggaacgagggaccaccatggaagg
ggggtagggggagagagtggggatgaggcattggacgaggatgctggtggaaccaaagag
gttcaggtgaaagttctcgtgaagcgtgggaacaagcagcaaacgaagaagatgttcatc
cctcgtgattgcgcacttttacagagcacaaaacagaaggaagcagcagagctagaagag
aagcaagatattaagaggttaatcttagagtacaatgaccgggaagaggaagagcttaat
ggcttaggctctcaaacaatgaattggatgcagacagggggtaatagagtccctactcgg
gggaacaattgggaggggtctggtgggaggagtggtgggccacgtcatccacatcatcgg
tatattggcggtggcgttcattacagtagaaaaaagtga
DBGET
integrated database retrieval system
