Momordica charantia (bitter melon): 111007278
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Entry
111007278 CDS
T05045
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111007278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcha03019
]
111007278
Messenger RNA biogenesis [BR:
mcha03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111007278
mRNA degradation factors
5'-3' decay
Decapping complex
111007278
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
111007278
NCBI-ProteinID:
XP_022135277
UniProt:
A0A6J1C292
LinkDB
All DBs
Position
Unknown
AA seq
798 aa
AA seq
DB search
MDGYDNGARVLQVASTSEDLKRFGDNSAEDARFDASQYAFFGKDVMEEVELGGLEDEEDD
ALAGGIDEEEFLFDKESEDFRPTSDIDDLVTSFEKFNNVGGGPRGVIGGRVLRESSSVNE
WAREEGFSNWLAQQAYDDESAQEGKRWSSHPHSSSLAESTSLYRTSSYPDQPQPQQYHQQ
FSSDPILVPKSPYPPTGMSPQASPNHVNMPFVPGGHHVASLSPSNLTPPNLQIGGFNPGA
RFGGNMPQLSAGLSINSGPPSQWNNQTGMFPGEHSSHLNNLLPRQLSNQNGFPQLLPQSQ
QQQQHRLQQPPFGGSLPGFQSHLFNSHISSGPPPLMNKLEAMLGGLPDMRDQRPKSVQKG
RQNARFIHQGHENNSFKNDFGWPFYRSKYMTTDELENIVRMQLAATHSNDPYVDDYYHQA
CLARKSAGAKLRHHFCPNQLRDLPPRARANNEPHAFLQVEALGRVPFSSIRRPRPLLEVD
PPSSSDAGTTEQKIPEKPLEQEPMLAARVTIEDGHCLLLDVDDIDRFLQFNQFQDSGALR
RRRQVLLEGLAASFHIVDPLGKDGRAVGLAPKDDFVFLRLVSLPKGRKLLGKYLQLLVPG
GELMRIVCMAIFRHLRFLFGSLPSDPTTADSVNDLARIVSLRTHGMDLGALSACLAAVVC
SSEQPPLRPLGNPAGDGASLILKSVLERATELLTDPHAASNYNITHRALWQASFDEFFGL
LTKYCVNKYDSIMQSLLRQSPQNAAAAVSDAAAAISQEMPVEVLRASLPHTDEHQRKVLI
DFAQRSMSVGGRNNFESV
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggatggttacgataacggagctagagttcttcaagtcgcgtctacatccgaggatctc
aagcgttttggagacaattccgcggaagatgctcgatttgatgcatcgcagtatgcattt
tttgggaaggatgttatggaggaggttgaattagggggattagaggacgaggaggatgat
gcactcgctggtgggattgatgaagaggagtttttgtttgataaggagagtgaggatttt
agacctacatctgatattgatgatctcgttacttcatttgaaaagttcaacaacgttgga
ggtgggccaaggggagttattggaggcagagtattgagagaaagttcgtcagtcaatgaa
tgggcacgcgaggagggtttttctaattggcttgcccagcaagcctacgatgatgaaagt
gctcaggaaggcaaaagatggtcatcacatccacattcttcttcccttgcagaatccacg
tctctgtataggacatcgtcataccctgatcagccacagccgcagcaataccaccaacag
ttctctagtgatccaattttagtgccaaagtctccatatcctccaactggaatgtctcct
caagcttcaccaaaccacgtaaatatgccttttgttcctggtggacaccatgttgcatcg
ttatctccatcaaatctcacacctccaaacttgcagattggtggctttaatcccggagca
cgcttcggaggaaatatgccacaactcagtgctggcctctctattaacagtgggccaccg
agccaatggaacaaccaaacgggcatgtttcccggagaacattcaagtcacttgaacaat
ttattgcctcgtcagttatcaaatcagaatggatttccacagttactcccacaatcacag
cagcagcagcagcataggttgcagcagcctccatttggtggctctctaccaggttttcag
tcccatctttttaattcccatatttcttcaggcccaccgcccttaatgaacaagttggaa
gccatgcttggtggtctaccagatatgagggatcaaaggcctaagtctgttcagaaaggt
agacagaatgctcgttttatccatcagggtcatgagaacaatagttttaagaatgatttt
gggtggcctttctatagatccaagtatatgacaactgatgaattagagaatattgttaga
atgcagcttgcagcaactcatagtaatgatccgtatgtagacgactattaccatcaggcc
tgtctcgcaagaaaatctgcgggtgcaaagttgagacatcatttctgccccaatcaacta
agggatcttcctccccgtgcccgtgctaataacgagccacatgcttttcttcaggtcgaa
gcacttggtagggttccattctcatcgattcgcagacctcgccctctccttgaagttgat
ccaccgagttcgtctgatgctggaaccactgaacaaaagattccagaaaagcctcttgaa
caggagcctatgctggcagctagagttacaattgaagatggtcattgtctactccttgat
gtggatgatattgatcgtttcctgcaattcaatcagttccaagatagcggtgctctgaga
agacgtcgtcaggtcctactagaaggacttgcagcatcgtttcatatagttgacccactt
ggtaaagatggtcgtgcagttgggctggctcctaaagatgatttcgttttcttgaggtta
gtatctcttccgaagggccggaagcttctagggaagtaccttcagctgctcgtaccagga
ggtgagcttatgcgaatagtttgtatggctattttccgccatttgagattcttgtttgga
agtcttccttccgatcctactacagcagattctgttaatgatcttgcaaggattgtttca
ctgcgtacccatggtatggatcttggagcattaagtgcatgtcttgcagccgtagtttgt
tcctcagagcaacctccacttcgccctcttgggaacccggctggagacggggcatccttg
attttgaaatctgttcttgagagggctacggaactcttaaccgatcctcatgctgcaagc
aactacaacattactcatcgagctctttggcaggcttctttcgatgaattctttggcctt
cttacaaagtactgtgtgaataagtatgacagtatcatgcaatcactcctgagacaatcc
ccacagaatgcagctgcggcagtctcagatgcagcagctgccatcagtcaagaaatgccg
gtcgaagtattacgtgcaagtcttccccacaccgacgagcatcagagaaaagtgttgata
gatttcgcccaacgctcgatgtccgttggtggtcgcaacaattttgagtccgtgtga
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