Momordica charantia (bitter melon): 111008763
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Entry
111008763 CDS
T05045
Name
(RefSeq) cleavage stimulation factor subunit 50
KO
K14406
cleavage stimulation factor subunit 1
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111008763
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcha03019
]
111008763
Messenger RNA biogenesis [BR:
mcha03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
111008763
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_Gbeta
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Cytochrom_D1
Beta-prop_DCAF4
Beta-prop_NWD2_C
Beta-prop_SCAP
Ge1_WD40
Beta-prop_VPS8
Beta-prop_NOL10_N
Beta-prop_WDR41
WD_LRWD1
Beta-prop_IFT140_1st
VPS8_N
Motif
Other DBs
NCBI-GeneID:
111008763
NCBI-ProteinID:
XP_022137259
UniProt:
A0A6J1C6R2
LinkDB
All DBs
Position
Unknown
AA seq
437 aa
AA seq
DB search
MEGSFEQTLQDGKLYRQLNSLIVAHLRDHNLTQAASAAASATMTPLNVDVPRNKLMELVA
KGLAVEKDETLRGNSASALYEFGSSVPTSYGSALASRTSAIDFSAVQDTKGSSKNFPKHE
TRHLSEHKNVARCARFSPDGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTF
YDHIQPINDLDFHPQNTVLISGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSG
DYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGSNGAINQVRYSATGSMYVTASKDGAVRL
WDGVSAKCIRLIASAHAAAEATSAKFTKDERFVLSCGKDSTVKLWDVGTGRLVKQYVGAT
HMQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAERVARWPSNHVGVPRWLEHSPTESA
FISCGTDKSIRFWKESL
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcagcttcgaacagaccctacaagatgggaagctttataggcaactcaattct
ctcatcgttgctcatcttcgcgaccacaacctcacccaggctgcaagtgctgctgcttct
gcgacaatgacgcctctgaatgttgatgtcccgcgtaataaacttatggagcttgttgca
aagggtcttgcggtggagaaagatgagacgttaagggggaattctgcttctgcattgtac
gaatttggttcatcggtgcccacttcatatgggtctgcactggcctctcgtacttctgcc
atcgacttcagcgctgtgcaggatacaaaagggtcatcgaagaattttccaaagcatgag
actcgacatctttcggaacataagaatgttgccagatgtgcaaggttcagtcctgatggg
agatttgttgccactggaagtgcggatatgtcaataaagctgtttgaggtggcaaagatc
aagcaaatgatgctgccagatgcaaaagatggtcctgtccgacctgttataaggacgttt
tatgatcacattcaaccaataaatgatttggattttcatcctcagaatactgttcttata
tctggtgcaaaagatcacacaataaaattctttgacttctccaaattgactgcaaagaaa
gcattcagagttatccaggatacccataacgtgcgttctatatctcttcatccctcagga
gattatcttttagcaggaacggatcatcccattgcccacctatatgatgtcaatactttt
cagtgctttctatctgcaaatgttccggaaataggaagtaatggagccataaatcaggtc
aggtattcagcaacaggtagtatgtatgtcactgcttcaaaggatggtgcggttcgttta
tgggatggagttagtgctaaatgtatccgcctaatcgccagtgcacatgccgcagctgag
gcaaccagtgcaaaatttacaaaagatgaaaggttcgttctttcttgtgggaaggactcc
actgtaaagctttgggatgtggggacggggagactggtcaaacaatatgttggagctacc
catatgcaattgagatgtcaggctgtcttcaatgatactgaggaatttgtgctatcgata
gacgagccgagcaatgagatcgttatttgggatgctctgacagcagagagagtagcaagg
tggccctcgaaccacgttggcgtgccccggtggctcgagcactcaccaacagagtcggcc
ttcatttcctgcgggaccgataaatcgatacgcttttggaaggaatccctctag
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